Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.1e-208 728.8 367 100.0
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.5e-158 563.1 323 87.3
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 7.3e-153 544.3 321 84.1
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 7.8e-147 524.2 323 81.1
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.0e-142 509.6 323 78.6
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.6e-139 498.4 324 75.6
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.7e-138 496.5 326 77.3
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 5.1e-138 495.0 324 76.9
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 9.6e-137 490.7 323 74.9
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.1e-136 489.6 323 75.2
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 3.6e-136 488.8 325 76.9
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 3.1e-135 485.7 323 74.9
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 6.9e-135 484.6 323 73.4
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 2.0e-134 483.0 313 76.4
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 2.0e-134 483.0 323 74.6
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 2.0e-134 483.0 324 74.4
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 4.5e-134 481.9 316 75.3
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 9.9e-134 480.7 324 74.4
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.3e-133 480.3 323 74.6
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.7e-133 479.9 325 76.0
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 4.9e-133 478.4 362 68.2
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 4.2e-132 475.3 327 73.7
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 5.4e-132 474.9 316 74.1
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 7.1e-132 474.6 324 73.5
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.2e-131 473.8 316 72.5
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.2e-131 473.8 316 72.5
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 7.9e-131 471.1 323 72.4
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.3e-130 469.5 326 74.8
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.9e-130 468.8 321 72.0
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.9e-130 468.8 312 73.7
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 5.1e-130 468.4 310 74.5
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.1e-129 467.2 309 73.1
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.9e-129 466.5 323 71.2
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 2.5e-129 466.1 324 71.9
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 2.5e-129 466.1 321 72.3
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 2.5e-129 466.1 329 73.9
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 5.6e-129 464.9 307 74.6
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.3e-128 463.8 323 72.4
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.1e-128 463.0 326 74.2
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 4.8e-128 461.8 323 70.6
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.1e-127 460.7 308 74.7
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 4.0e-127 458.8 331 73.1
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 9.0e-127 457.6 308 76.0
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.5e-126 456.8 318 74.5
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 2.6e-126 456.1 364 65.1
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 5.8e-126 454.9 323 71.5
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 9.9e-126 454.1 324 72.5
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 9.9e-126 454.1 325 73.5
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.3e-125 453.8 325 70.8
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 8.4e-125 451.1 300 74.7
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.5e-124 448.4 326 71.5
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.2e-123 447.2 330 70.6
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.1e-123 446.4 336 69.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 6.7e-122 441.4 318 72.0
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 6.7e-122 441.4 332 68.7
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 3.3e-121 439.1 323 69.7
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 4.3e-121 438.7 310 71.9
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.4e-119 433.7 328 68.9
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.0e-119 432.2 377 62.1
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 6.9e-119 431.4 322 69.6
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 2.0e-118 429.9 320 68.8
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.3e-117 427.2 321 66.0
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.8e-117 425.6 320 68.8
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.1e-116 424.1 321 69.5
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 1.4e-116 423.7 307 70.0
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.2e-116 422.2 330 68.5
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 7.1e-116 421.4 330 65.5
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 7.1e-116 421.4 306 68.6
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 2.7e-115 419.5 301 70.4
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 7.9e-115 417.9 306 69.9
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 8.7e-114 414.5 293 70.3
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-113 413.3 300 70.3
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 9.6e-113 411.0 325 66.8
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 2.8e-112 409.5 326 65.3
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 3.7e-112 409.1 295 69.8
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.8e-111 406.8 293 68.9
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.4e-111 406.4 300 70.3
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 5.3e-111 405.2 296 68.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 5.0e-109 398.7 294 68.0
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.4e-108 397.1 294 67.7
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 1.9e-108 396.7 295 67.8
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 5.5e-108 395.2 303 67.7
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 9.3e-108 394.4 297 67.0
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 9.3e-108 394.4 294 69.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.6e-107 393.7 294 67.0
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 3.6e-107 392.5 297 67.0
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 3.0e-106 389.4 299 65.2
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 3.0e-106 389.4 289 69.9
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.9e-106 389.0 318 65.4
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 6.3e-104 381.7 319 63.9
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 3.1e-103 379.4 309 65.7
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 4.1e-103 379.0 324 61.7
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.2e-102 377.5 297 65.3
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.2e-102 377.5 320 62.5
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 2.9e-101 372.9 328 61.0
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 3.8e-101 372.5 356 60.1
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 3.8e-101 372.5 302 61.9
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 4.2e-100 369.0 343 60.1
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.6e-99 367.1 340 57.9
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 5.7e-97 358.6 315 61.9
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 6.9e-95 351.7 343 53.9
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.5e-94 350.5 221 80.1
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.3e-93 347.4 223 78.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 8.8e-90 334.7 244 68.4
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 8.8e-82 308.1 198 79.8
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.5e-76 290.0 226 68.6
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 4.2e-76 289.3 304 50.7
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 6.5e-69 265.4 292 51.0
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.0e-66 258.1 227 61.2
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.0e-66 258.1 340 48.2
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 5.2e-66 255.8 152 82.2
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.0e-58 231.5 344 41.9
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 2.1e-51 207.2 204 58.8
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 8.3e-40 168.7 122 68.9
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 3.2e-39 166.8 147 63.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.6e-38 164.5 146 63.7
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.2e-31 140.2 176 49.4
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.2e-30 138.3 301 34.2
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 7.3e-28 129.0 78 76.9
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 7.3e-28 129.0 78 76.9
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 9.0e-26 122.1 340 28.5
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 8.4e-24 115.5 361 28.0
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-21 108.2 82 70.7
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 3.0e-21 107.1 82 69.5
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 3.0e-21 107.1 82 69.5
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.5e-20 104.8 68 73.5
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-20 104.4 79 70.9
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 3.4e-17 93.6 86 58.1
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 3.8e-16 90.1 96 54.2
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.9e-15 87.8 52 76.9
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.6e-14 84.7 73 63.0
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.1e-10 70.5 64 54.7
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.9e-07 61.2 46 71.7
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 3.2e-07 60.5 44 68.2
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 2.1e-06 57.8 64 54.7


User provided reference genes

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