Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 0.0e+00 1150.2 553 100.0
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 0.0e+00 1139.0 563 97.9
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 3.1e-304 1047.7 559 90.0
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.4e-301 1038.9 554 89.2
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 7.8e-300 1033.1 554 89.4
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.0e-296 1020.8 561 86.3
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 9.9e-295 1016.1 555 86.5
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 1.9e-293 1011.9 555 86.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 2.4e-293 1011.5 555 86.1
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 3.2e-293 1011.1 568 84.9
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 7.1e-293 1010.0 554 87.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.6e-292 1008.8 554 86.5
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.3e-291 1005.0 554 86.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.5e-290 1002.3 523 91.8
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.5e-290 1001.5 556 86.0
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 4.3e-290 1000.7 554 85.9
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 5.6e-290 1000.3 554 85.9
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 6.2e-289 996.9 555 84.7
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.8e-288 995.3 554 85.6
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 3.1e-288 994.6 554 85.7
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.3e-286 989.2 553 84.4
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 1.4e-285 985.7 554 83.8
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.9e-285 985.3 555 84.0
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 3.2e-285 984.6 553 84.4
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 6.0e-284 980.3 566 83.2
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.7e-283 978.8 565 83.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 3.0e-283 978.0 553 83.7
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 3.9e-283 977.6 554 83.0
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.9e-282 975.3 558 83.3
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 4.3e-282 974.2 556 82.6
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.8e-280 968.8 556 82.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-279 966.1 566 81.3
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.5e-279 965.7 563 81.3
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.9e-278 961.4 550 83.1
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 4.2e-277 957.6 549 82.0
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.2e-276 956.1 555 82.0
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.6e-276 955.7 555 81.6
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 2.7e-276 954.9 552 82.6
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.8e-275 952.2 548 82.3
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 6.7e-275 950.3 533 85.7
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.5e-274 949.1 555 80.0
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.5e-274 949.1 554 81.0
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.5e-274 949.1 560 78.8
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 2.5e-274 948.3 548 81.6
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 5.6e-274 947.2 555 79.6
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 7.4e-274 946.8 557 79.7
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.8e-273 944.9 574 77.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.4e-272 942.6 558 81.2
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.4e-272 941.8 553 81.4
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.2e-271 939.5 558 81.2
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 9.9e-271 936.4 571 76.7
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 2.2e-270 935.3 555 78.7
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 6.4e-270 933.7 554 78.5
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 2.5e-269 931.8 587 75.0
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.5e-269 931.8 567 77.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 4.2e-269 931.0 555 77.8
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 4.2e-269 931.0 555 79.8
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 6.0e-268 927.2 555 78.0
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.8e-267 925.6 536 83.0
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.3e-267 925.2 551 78.8
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 8.7e-267 923.3 559 77.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 7.4e-266 920.2 565 77.0
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 2.1e-265 918.7 557 79.2
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 4.8e-265 917.5 549 80.3
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 4.8e-265 917.5 556 77.3
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.4e-264 916.0 548 78.1
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.1e-264 914.8 560 76.1
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.1e-264 914.8 535 80.7
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 4.0e-264 914.4 544 79.4
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 6.9e-264 913.7 550 78.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.5e-263 912.5 564 79.1
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 4.5e-263 911.0 563 75.1
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.9e-262 908.3 562 74.9
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 4.9e-262 907.5 587 76.1
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 4.9e-262 907.5 552 77.0
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.1e-261 906.4 517 82.6
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.4e-261 906.0 560 75.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 7.1e-261 903.7 552 76.8
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.6e-260 902.5 550 76.2
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 6.0e-260 900.6 550 77.8
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.8e-259 899.0 550 77.6
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.0e-259 898.3 560 76.1
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 3.0e-259 898.3 562 75.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.0e-259 898.3 548 74.8
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 3.0e-259 898.3 557 75.6
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.9e-259 897.9 560 75.2
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 8.7e-259 896.7 560 75.9
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.5e-258 896.0 561 74.0
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.3e-258 894.4 556 75.7
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.1e-256 888.3 554 75.1
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 9.0e-256 886.7 563 73.9
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 4.5e-255 884.4 555 76.9
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.0e-254 883.2 539 79.0
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.2e-254 882.1 555 74.4
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.5e-253 878.6 556 74.8
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 5.5e-253 877.5 551 75.5
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 5.5e-253 877.5 551 75.7
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 5.5e-253 877.5 551 75.5
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 7.2e-253 877.1 551 75.7
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 9.4e-253 876.7 561 74.2
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.6e-252 875.9 551 75.0
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.6e-252 875.9 558 76.9
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 2.7e-252 875.2 561 74.0
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 4.6e-252 874.4 561 73.8
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 6.1e-252 874.0 561 74.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.8e-251 872.5 561 74.0
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.3e-251 872.1 561 73.4
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.3e-250 867.8 549 77.4
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 9.7e-250 866.7 525 79.4
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 6.3e-249 864.0 559 73.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.2e-246 855.5 563 71.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.9e-245 852.4 537 77.7
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.5e-242 842.8 544 74.1
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.3e-241 839.7 518 76.3
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.7e-241 839.3 495 81.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 1.2e-236 823.2 546 74.2
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 8.0e-236 820.5 517 75.0
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.5e-234 816.2 516 76.9
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 8.2e-233 810.4 554 70.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 4.5e-231 804.7 534 74.3
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-230 802.4 553 71.4
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 5.2e-227 791.2 564 67.7
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 8.8e-219 763.8 551 67.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.5e-215 751.5 479 76.6
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 1.7e-193 679.9 556 62.2
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.1e-192 675.2 569 60.5
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.6e-191 673.3 416 78.1
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 7.8e-191 671.0 583 58.5
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.1e-189 667.2 544 61.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 6.6e-174 614.8 347 86.7
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.6e-149 531.2 315 81.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.6e-143 512.3 350 70.6
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.4e-130 469.5 278 78.8
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 6.5e-129 465.3 263 86.7
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.5e-125 454.1 318 70.1
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.8e-115 420.6 515 49.3
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-107 394.4 294 67.3
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.7e-105 387.5 216 76.9
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 8.5e-105 385.2 302 61.3
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 3.3e-96 356.7 288 62.8
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.7e-95 352.8 217 78.8
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-92 344.7 251 70.5
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.6e-77 293.9 201 71.6
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 7.1e-75 285.8 562 32.9
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 4.3e-72 276.6 198 70.2
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.1e-65 253.1 144 75.7
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.7e-57 228.0 457 30.9
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 1.3e-52 211.8 227 46.3
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 2.2e-52 211.1 125 76.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.1e-38 164.1 128 60.9
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-34 152.1 106 59.4
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 6.0e-34 149.8 100 72.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.9e-32 144.8 106 63.2
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.4e-30 138.7 110 60.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 3.2e-27 127.5 150 48.7
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.9e-24 118.2 121 51.2
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.4e-22 112.1 54 85.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.1e-18 98.2 56 82.1
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.5e-12 76.6 43 79.1
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 6.1e-10 70.1 64 48.4
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 3.7e-07 60.8 71 38.0
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 3.7e-07 60.8 63 38.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 6.3e-07 60.1 70 35.7
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 6.3e-07 60.1 60 40.0
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 8.2e-07 59.7 77 29.9
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 8.2e-07 59.7 77 29.9
Gorai.004G005700 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.4e-06 58.9 150 24.0
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.4e-06 58.2 76 30.3
Nn1g05882 Nelumbo nucifera HOM05D000157 ORTHO05D005495 3.1e-06 57.8 59 35.6
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 4.1e-06 57.4 75 34.7
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 4.1e-06 57.4 59 40.7
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 4.1e-06 57.4 63 36.5
ATR0326G031 Amborella trichopoda HOM05D000082 ORTHO05D014356 5.3e-06 57.0 58 37.9
Dinv03794 Davidia involucrata HOM05D000082 ORTHO05D000038 5.3e-06 57.0 58 36.2
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 7.0e-06 56.6 55 38.2
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.0e-06 56.6 55 38.2
Zm00001eb110240 Zea mays HOM05D000082 ORTHO05D000038 7.0e-06 56.6 57 38.6
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 9.1e-06 56.2 51 33.3
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 9.1e-06 56.2 84 34.5
MBI07_g28241_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.1e-06 56.2 56 39.3
MBI11_g24782_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 9.1e-06 56.2 139 32.4
MBI15_g38537_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.1e-06 56.2 56 39.3
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 9.1e-06 56.2 115 32.2


User provided reference genes

Program Settings