Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 2.8e-217 759.2 494 100.0
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 2.7e-143 513.5 459 81.3
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 7.6e-138 495.4 473 77.8
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 7.2e-136 488.8 497 70.2
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 9.1e-123 445.3 494 69.0
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.6e-119 434.5 476 70.4
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.6e-119 433.3 503 64.2
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 6.1e-119 432.6 432 68.8
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.3e-116 424.9 472 71.8
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 5.3e-115 419.5 503 63.4
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 9.4e-112 408.7 456 73.7
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 5.2e-110 402.9 494 65.4
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.5e-109 401.4 495 63.4
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 3.5e-106 390.2 259 76.4
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 8.5e-105 385.6 492 62.8
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.1e-103 380.9 258 77.5
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.4e-102 378.3 473 66.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.3e-100 369.4 456 63.8
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 9.1e-99 365.5 426 63.4
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 4.5e-98 363.2 463 65.7
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.5e-96 358.2 456 62.5
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 4.2e-96 356.7 494 61.1
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 4.0e-94 350.1 384 66.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 9.8e-93 345.5 444 60.8
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 2.2e-92 344.4 458 62.0
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-91 342.0 380 68.2
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.4e-91 341.7 473 62.4
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 3.1e-91 340.5 383 67.6
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 7.0e-91 339.3 403 63.3
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 7.0e-91 339.3 437 64.8
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 9.2e-91 339.0 471 58.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.0e-90 337.8 464 61.6
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.0e-89 335.5 258 67.8
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.0e-89 335.5 381 65.6
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 8.6e-89 332.4 424 59.4
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 2.5e-88 330.9 430 65.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.6e-87 328.2 368 68.8
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 4.7e-87 326.6 268 62.7
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 6.1e-87 326.2 385 58.2
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 3.0e-86 323.9 386 63.2
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 4.0e-86 323.6 421 61.0
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 8.9e-86 322.4 425 59.1
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 5.7e-85 319.7 409 63.8
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.1e-83 315.5 452 64.2
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.8e-83 314.7 393 60.6
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 6.6e-81 306.2 264 62.5
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 1.9e-80 304.7 384 48.2
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 4.3e-80 303.5 384 47.9
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 4.3e-80 303.5 442 62.2
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.2e-79 302.0 429 66.4
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.6e-79 301.6 384 47.1
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.6e-79 301.6 384 47.1
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 2.1e-79 301.2 263 60.1
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 4.0e-78 297.0 368 65.5
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 4.0e-78 297.0 263 59.7
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 1.5e-77 295.0 496 56.7
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 2.6e-77 294.3 263 59.7
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 2.9e-76 290.8 387 47.0
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.4e-75 288.5 408 66.4
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 1.6e-74 285.0 266 57.1
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.7e-74 284.3 263 59.3
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.3e-73 282.0 429 56.2
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.9e-73 280.4 355 63.1
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.6e-72 276.6 258 57.8
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 4.0e-70 270.4 185 72.4
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.4e-69 267.3 381 58.3
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 3.2e-67 260.8 172 72.1
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 7.8e-66 256.1 346 59.0
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.3e-65 255.4 361 59.8
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 3.9e-65 253.8 273 51.6
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.1e-62 245.7 185 67.0
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 6.8e-62 243.0 183 64.5
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 2.0e-61 241.5 228 53.9
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 3.4e-61 240.7 213 57.7
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 4.9e-60 236.9 351 59.5
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.1e-56 225.7 499 48.7
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.9e-56 224.9 173 61.3
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.9e-51 208.4 139 70.5
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 6.0e-50 203.4 186 59.1
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 4.0e-46 190.7 138 61.6
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 4.5e-45 187.2 174 52.9
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.7e-42 177.9 117 70.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 5.1e-41 173.7 390 45.6
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.1e-40 172.6 433 50.6
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 1.7e-36 158.7 92 78.3
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.9e-35 155.2 164 52.4
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 6.0e-34 150.2 242 64.9
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.3e-33 149.1 129 49.6
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.9e-32 145.2 129 48.1
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.9e-32 145.2 206 87.4
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 9.6e-32 142.9 156 45.5
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 4.9e-28 130.6 107 52.3
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 4.9e-28 130.6 107 52.3
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 4.9e-28 130.6 168 40.5
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.0e-26 123.6 71 80.3
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 3.9e-25 120.9 134 47.0
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 4.8e-23 114.0 100 55.0
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 4.8e-23 114.0 100 55.0
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.5e-21 109.0 67 74.6
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.1e-11 76.3 82 41.5
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea HOM05D002444 ORTHO05D009235 4.2e-11 74.3 64 53.1
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 1.6e-10 72.4 144 26.4
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 6.1e-10 70.5 144 25.7
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 1.0e-09 69.7 144 27.8
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 5.1e-09 67.4 144 25.0
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 1.5e-08 65.9 126 28.6
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 3.3e-08 64.7 168 22.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 4.4e-08 64.3 126 27.8
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 5.7e-08 63.9 144 24.3
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 1.3e-07 62.8 127 26.0
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 1.7e-07 62.4 144 25.0
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 1.7e-07 62.4 167 21.6
Sabra10G0031400 Salix brachista HOM05D006740 ORTHO05D008571 2.2e-07 62.0 226 22.1
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 2.8e-07 61.6 224 21.9
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.8e-07 60.8 155 29.7
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 6.3e-07 60.5 169 23.7
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 8.2e-07 60.1 208 24.5
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 1.1e-06 59.7 168 23.2
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.1e-06 59.7 121 27.3
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 1.1e-06 59.7 144 27.8
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 1.1e-06 59.7 84 32.1
MSTRG.10167 Avicennia marina HOM05D007409 ORTHO05D009264 1.8e-06 58.9 123 29.3
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 1.8e-06 58.9 149 26.2
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 1.8e-06 58.9 206 24.3
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 1.8e-06 58.9 153 27.5
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 2.4e-06 58.5 132 28.8
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 3.1e-06 58.2 185 23.8
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 3.1e-06 58.2 115 24.3
Potri.010G148700 Populus trichocarpa HOM05D007409 ORTHO05D009264 3.1e-06 58.2 143 25.9
ATR0697G276 Amborella trichopoda HOM05D002444 ORTHO05D009235 4.1e-06 57.8 59 42.4
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 6.9e-06 57.0 130 25.4
COL.COLO4_36944 Corchorus olitorius HOM05D007937 ORTHO05D010000 6.9e-06 57.0 92 27.2
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 6.9e-06 57.0 143 23.1
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 6.9e-06 57.0 143 23.1
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 6.9e-06 57.0 143 23.1
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 9.1e-06 56.6 144 27.1
Sed0014802 Sechium edule HOM05D007409 ORTHO05D009264 9.1e-06 56.6 141 23.4


User provided reference genes

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