Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.1e-87 326.6 163 100.0
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.5e-65 253.1 151 86.1
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 3.1e-63 245.4 151 83.4
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 9.1e-63 243.8 155 84.5
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.5e-62 243.0 151 82.1
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 8.5e-61 237.3 151 80.1
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 8.5e-61 237.3 151 80.1
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 2.6e-57 225.7 152 77.0
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 7.4e-57 224.2 152 76.3
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.2e-54 216.9 151 71.5
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.0e-54 216.1 151 71.5
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 2.5e-52 209.1 151 70.2
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 9.4e-52 207.2 151 71.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 9.4e-52 207.2 153 71.9
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 1.6e-51 206.5 140 74.3
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 4.7e-51 204.9 155 70.3
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 1.5e-49 199.9 153 68.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.0e-49 199.5 148 69.6
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 3.3e-49 198.7 151 69.5
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 2.2e-48 196.1 148 68.2
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.4e-47 193.4 152 67.1
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.8e-47 193.0 151 65.6
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.8e-47 193.0 151 65.6
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.4e-47 192.6 151 66.2
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 5.3e-47 191.4 148 66.9
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 7.0e-47 191.0 157 66.2
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 9.1e-47 190.7 148 66.9
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 4.5e-46 188.3 154 63.6
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 5.9e-46 188.0 150 67.3
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 5.9e-46 188.0 151 62.9
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.7e-45 186.4 151 66.2
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.5e-45 184.5 154 65.6
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.5e-44 183.3 135 67.4
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.5e-44 183.3 153 61.4
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.9e-44 183.0 153 62.7
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.9e-44 183.0 153 62.7
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.9e-44 183.0 149 64.4
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 4.2e-44 181.8 152 63.2
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 7.2e-44 181.0 151 59.6
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 9.4e-44 180.6 151 59.6
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.2e-43 180.3 152 59.9
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.6e-43 179.9 153 60.1
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.6e-43 179.9 149 63.8
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.7e-43 179.1 136 66.9
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.6e-43 178.7 156 66.0
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 3.6e-43 178.7 158 62.0
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 3.6e-43 178.7 136 66.9
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 3.6e-43 178.7 136 66.9
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 4.7e-43 178.3 152 62.5
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 6.1e-43 177.9 151 60.9
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 6.1e-43 177.9 149 65.1
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 8.0e-43 177.6 151 61.6
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 8.0e-43 177.6 136 66.2
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.0e-42 177.2 151 62.9
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.0e-42 177.2 151 62.9
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 1.0e-42 177.2 136 66.2
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 2.3e-42 176.0 136 65.4
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 4.0e-42 175.3 151 60.9
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 5.2e-42 174.9 151 61.6
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 5.2e-42 174.9 151 60.9
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 5.2e-42 174.9 151 62.3
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 5.2e-42 174.9 148 63.5
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 6.8e-42 174.5 149 64.4
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 6.8e-42 174.5 149 64.4
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 6.8e-42 174.5 156 62.8
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 6.8e-42 174.5 152 61.2
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 2.0e-41 172.9 151 60.3
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 2.6e-41 172.6 147 58.5
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.6e-41 172.6 147 57.8
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 2.6e-41 172.6 149 59.7
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-41 171.8 150 58.7
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 5.7e-41 171.4 147 57.8
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 7.5e-41 171.0 138 66.7
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 9.7e-41 170.6 147 57.1
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.8e-40 169.1 136 66.9
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.8e-40 169.1 155 61.9
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 3.7e-40 168.7 148 62.2
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 3.7e-40 168.7 155 61.3
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 3.7e-40 168.7 155 61.3
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 4.8e-40 168.3 148 60.8
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 4.8e-40 168.3 136 66.9
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 8.3e-40 167.5 146 58.9
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 2.0e-38 162.9 151 55.6
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 1.3e-37 160.2 148 59.5
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.3e-37 160.2 148 58.1
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.9e-37 159.1 148 57.4
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 5.0e-37 158.3 149 57.7
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.1e-36 157.1 149 57.0
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 2.5e-36 156.0 149 56.4
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 2.5e-36 156.0 151 56.3
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 1.6e-35 153.3 138 62.3
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 1.6e-35 153.3 138 62.3
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 2.7e-35 152.5 150 52.7
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 6.1e-35 151.4 139 59.7
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.8e-34 149.8 155 55.5
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 4.0e-34 148.7 150 53.3
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 4.0e-34 148.7 159 54.1
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 6.8e-34 147.9 138 60.1
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.2e-33 147.1 140 60.0
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.6e-33 146.0 177 52.5
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 3.4e-33 145.6 138 58.7
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 5.7e-33 144.8 138 58.7
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 5.7e-33 144.8 148 54.1
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 9.8e-33 144.1 138 59.4
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 1.3e-32 143.7 135 63.7
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.7e-32 143.3 151 57.0
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.7e-32 143.3 138 59.4
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.7e-32 143.3 138 59.4
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 2.2e-32 142.9 139 56.8
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 2.2e-32 142.9 138 58.7
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 2.8e-32 142.5 138 59.4
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 3.7e-32 142.1 139 59.0
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.7e-32 142.1 146 52.7
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 4.8e-32 141.7 138 58.0
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 4.8e-32 141.7 153 52.3
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 4.8e-32 141.7 150 52.0
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 4.8e-32 141.7 122 57.4
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 4.8e-32 141.7 136 55.9
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.8e-32 141.7 159 53.5
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 8.3e-32 141.0 150 51.3
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.1e-31 140.6 151 55.0
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 3.1e-31 139.0 138 56.5
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.5e-28 130.2 155 54.2
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 3.3e-28 129.0 122 58.2
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 5.5e-28 128.3 135 54.8
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 9.5e-28 127.5 169 47.9
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 1.6e-27 126.7 142 54.2
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 1.6e-27 126.7 142 54.2
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.6e-27 126.7 169 47.9
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 4.7e-27 125.2 149 47.7
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.0e-26 124.0 141 53.9
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 1.0e-26 124.0 168 44.6
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.3e-26 122.9 141 53.2
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 4.0e-26 122.1 120 56.7
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 1.5e-25 120.2 107 55.1
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.5e-25 120.2 154 42.2
RhsimUnG0029100 Rhododendron simsii HOM05D003084 ORTHO05D003580 7.5e-25 117.9 88 71.6
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 7.0e-23 111.3 154 46.1
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.3e-21 107.1 92 60.9
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.6e-19 100.1 109 51.4
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.6e-19 99.0 159 42.1
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 5.2e-18 95.1 140 46.4
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 2.4e-15 86.3 80 56.2
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.1e-15 85.5 135 36.3
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.4e-15 85.1 135 36.3
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 3.5e-14 82.4 131 38.9
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.0e-14 81.6 68 60.3
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.2e-11 73.9 134 40.3


User provided reference genes

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