Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 6.3e-171 604.0 298 100.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 7.5e-156 553.9 298 90.9
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 9.8e-156 553.5 298 90.6
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.5e-151 539.7 299 88.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.6e-150 536.2 298 88.3
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 3.6e-150 535.0 299 87.6
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.3e-149 532.3 298 85.9
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 8.9e-149 530.4 298 87.6
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.2e-148 530.0 311 86.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 3.4e-148 528.5 309 85.4
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 9.8e-148 526.9 298 86.6
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 9.2e-146 520.4 298 87.2
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 2.0e-145 519.2 298 85.6
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 3.5e-145 518.5 298 84.2
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 5.9e-145 517.7 298 85.2
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 5.9e-145 517.7 298 84.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 5.0e-144 514.6 299 84.3
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 5.0e-144 514.6 299 84.3
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 8.6e-144 513.8 302 84.1
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.1e-143 513.5 298 83.2
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.5e-143 513.1 298 84.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.5e-143 513.1 299 85.6
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.5e-143 513.1 298 85.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 2.5e-143 512.3 300 82.3
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.5e-143 512.3 300 83.3
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 3.3e-143 511.9 298 83.6
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.3e-143 511.9 299 84.3
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 4.3e-143 511.5 299 83.9
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 7.3e-143 510.8 298 82.9
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 9.5e-143 510.4 298 81.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 9.5e-143 510.4 298 83.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.2e-142 510.0 302 83.1
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 6.2e-142 507.7 301 82.7
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 6.2e-142 507.7 329 77.2
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 6.2e-142 507.7 331 76.7
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 8.0e-142 507.3 298 81.9
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.0e-141 506.9 298 82.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.8e-141 506.1 300 83.3
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.3e-141 505.8 299 82.9
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 2.3e-141 505.8 298 82.2
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 3.1e-141 505.4 297 80.8
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 5.2e-141 504.6 298 82.2
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 8.9e-141 503.8 298 81.5
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.5e-140 503.1 298 81.9
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 2.0e-140 502.7 293 81.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.0e-140 502.7 298 82.6
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.0e-140 502.7 298 81.9
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.6e-140 502.3 293 83.3
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 3.4e-140 501.9 299 81.6
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 5.8e-140 501.1 301 80.7
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 4.9e-139 498.0 298 81.2
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 6.4e-139 497.7 298 80.9
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.1e-138 496.9 302 81.8
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.1e-138 496.9 298 80.5
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.9e-138 496.1 290 81.7
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 4.1e-138 495.0 300 81.3
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 5.4e-138 494.6 299 80.9
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 5.4e-138 494.6 299 79.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 5.4e-138 494.6 301 81.1
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 7.0e-138 494.2 298 81.2
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.2e-137 493.4 298 80.9
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.6e-137 493.0 301 80.4
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 7.8e-137 490.7 300 80.0
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.0e-136 490.3 298 80.5
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 5.0e-136 488.0 300 80.0
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 3.3e-135 485.3 297 79.1
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 9.5e-135 483.8 268 90.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.1e-133 480.3 298 78.9
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 1.1e-133 480.3 298 77.9
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.8e-133 479.6 282 82.3
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.8e-133 479.6 333 73.6
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 8.9e-133 477.2 291 78.4
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 1.5e-132 476.5 291 78.4
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.5e-132 476.5 291 78.0
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.5e-132 476.5 291 78.0
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.5e-132 476.5 291 78.0
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.5e-132 476.5 291 78.0
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 2.6e-132 475.7 281 84.0
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.4e-132 475.3 298 75.8
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 76.5
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 75.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.4e-130 469.9 298 74.5
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 4.1e-130 468.4 249 90.4
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 6.0e-129 464.5 291 75.6
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 8.6e-128 460.7 298 78.9
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.2e-126 456.8 239 91.6
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 4.0e-125 451.8 279 79.9
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.6e-121 439.9 270 81.1
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.3e-120 436.0 292 71.2
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.6e-118 429.9 237 85.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 6.2e-118 427.9 241 85.1
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.4e-117 426.8 294 71.8
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 5.2e-117 424.9 291 71.1
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.3e-115 420.2 267 74.5
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.8e-115 418.7 247 83.8
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 6.9e-109 397.9 222 85.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 3.3e-103 379.0 238 76.9
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.1e-94 349.7 288 60.1
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 6.2e-94 348.2 294 57.8
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.2e-92 344.0 287 58.5
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.2e-92 344.0 282 68.1
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.2e-90 335.9 411 48.9
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 7.4e-87 324.7 208 74.5
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.7e-68 261.5 272 51.8
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.1e-66 257.7 258 60.1
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 5.9e-60 235.3 153 77.8
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 5.5e-58 228.8 292 40.8
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 2.8e-54 216.5 119 88.2
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 7.0e-53 211.8 117 79.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 2.7e-52 209.9 219 47.5
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 5.0e-51 205.7 195 55.9
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.3e-48 196.8 224 51.8
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 3.6e-41 172.9 175 56.0
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 2.7e-36 156.8 111 69.4
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 8.6e-35 151.8 234 38.0
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 4.6e-28 129.4 73 80.8
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 3.9e-27 126.3 82 76.8
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 7.8e-20 102.1 52 90.4
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.1e-18 98.2 65 73.8
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 3.3e-18 96.7 190 37.9
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 7.3e-18 95.5 54 79.6
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.8e-17 93.6 55 81.8
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 1.1e-16 91.7 52 76.9
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 2.0e-15 87.4 157 36.9
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 2.2e-14 84.0 65 66.2
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.7e-14 83.2 59 67.8
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 1.2e-12 78.2 54 72.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.5e-10 71.2 52 73.1
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 7.3e-10 68.9 170 30.0
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.6e-09 67.8 166 31.9
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 2.1e-09 67.4 183 30.6
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.1e-08 63.5 81 49.4
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 8.9e-08 62.0 166 30.1
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.2e-07 61.6 42 73.8
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.5e-07 61.2 96 44.8
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 5.8e-07 59.3 170 27.6
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-06 58.2 83 44.6
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.7e-06 57.8 26 88.5
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 3.8e-06 56.6 53 50.9
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 3.8e-06 56.6 53 50.9
Lsat_1_v5_gn_3_11781 Lactuca sativa HOM05D000104 ORTHO05D008354 4.9e-06 56.2 53 52.8
Lsat_1_v5_gn_5_43780 Lactuca sativa HOM05D005598 ORTHO05D008354 6.4e-06 55.8 40 65.0


User provided reference genes

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