Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.3e-108 395.6 202 100.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 4.2e-33 145.6 88 86.4
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 8.7e-31 137.9 110 66.4
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 6.4e-26 121.7 90 74.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 9.3e-25 117.9 90 72.2
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.6e-24 117.1 90 72.2
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.7e-24 116.3 90 72.2
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 7.9e-24 114.8 90 71.1
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.0e-23 112.8 91 67.0
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.2e-19 100.9 90 61.1
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.5e-19 100.5 90 60.0
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 3.4e-19 99.4 90 60.0
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 4.5e-19 99.0 90 58.9
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 5.8e-19 98.6 90 60.0
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 1.3e-18 97.4 90 63.3
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.7e-18 97.1 118 50.8
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.2e-18 96.7 90 60.0
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 2.2e-18 96.7 118 50.8
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.2e-18 96.7 90 60.0
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.9e-18 96.3 90 56.7
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 3.8e-18 95.9 88 59.1
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.9e-18 95.5 90 58.9
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 6.5e-18 95.1 90 60.0
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 6.5e-18 95.1 90 57.8
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.5e-18 95.1 90 57.8
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 6.5e-18 95.1 90 56.7
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.1e-17 94.4 118 47.5
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.4e-17 94.0 118 48.3
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 1.4e-17 94.0 118 48.3
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.4e-17 94.0 90 57.8
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.4e-17 94.0 118 49.2
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 2.5e-17 93.2 90 55.6
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.5e-17 93.2 90 57.8
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.5e-17 93.2 118 48.3
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.2e-17 92.8 90 56.7
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 3.2e-17 92.8 118 49.2
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 3.2e-17 92.8 90 54.4
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.2e-17 92.4 90 56.7
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 4.2e-17 92.4 90 58.9
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 5.5e-17 92.0 90 60.0
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 7.1e-17 91.7 90 56.7
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 2.1e-16 90.1 118 48.3
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 2.7e-16 89.7 118 46.6
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 4.6e-16 89.0 87 59.8
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 6.0e-16 88.6 90 55.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 1.3e-15 87.4 92 54.3
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 3.0e-15 86.3 90 53.3
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 3.0e-15 86.3 90 58.9
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 3.0e-15 86.3 89 52.8
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 3.9e-15 85.9 90 55.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 1.1e-14 84.3 118 44.9
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.1e-14 84.3 118 43.2
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.1e-14 84.3 89 56.2
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.5e-14 84.0 90 51.1
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.5e-14 84.0 91 54.9
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.9e-14 83.6 90 53.3
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.5e-14 83.2 91 53.8
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 2.5e-14 83.2 90 56.7
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.3e-14 82.4 91 53.8
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 5.7e-14 82.0 91 52.7
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 9.6e-14 81.3 90 52.2
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 9.6e-14 81.3 90 52.2
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.3e-13 80.9 74 59.5
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.1e-13 80.1 90 48.9
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 2.1e-13 80.1 90 52.2
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.1e-13 80.1 91 51.6
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 2.1e-13 80.1 91 51.6
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 2.8e-13 79.7 91 50.5
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 3.7e-13 79.3 90 53.3
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 3.7e-13 79.3 88 53.4
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.7e-13 79.3 76 57.9
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 6.2e-13 78.6 90 51.1
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 8.2e-13 78.2 90 50.0
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 8.2e-13 78.2 88 52.3
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 1.4e-12 77.4 90 47.8
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.4e-12 76.6 76 56.6
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 3.1e-12 76.3 90 50.0
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 6.9e-12 75.1 90 46.7
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 6.9e-12 75.1 88 48.9
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 6.9e-12 75.1 90 48.9
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 9.0e-12 74.7 100 44.0
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 2.0e-11 73.6 90 46.7
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.4e-11 72.8 91 46.2
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 4.5e-11 72.4 90 46.7
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 5.8e-11 72.0 90 44.4
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 5.8e-11 72.0 88 45.5
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 1.7e-10 70.5 88 43.2
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.7e-10 70.5 92 45.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 2.2e-10 70.1 89 47.2
COL.COLO4_19666 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.2e-10 70.1 55 70.9
COL.COLO4_32828 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.2e-10 70.1 55 70.9
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 2.2e-10 70.1 90 47.8
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 2.9e-10 69.7 90 43.3
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 3.8e-10 69.3 89 48.3
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 3.8e-10 69.3 96 47.9
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 3.8e-10 69.3 96 47.9
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 5.0e-10 68.9 85 47.1
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 6.5e-10 68.6 88 45.5
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 6.5e-10 68.6 76 51.3
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 8.4e-10 68.2 89 46.1
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.1e-09 67.8 89 47.2
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 3.2e-09 66.2 96 44.8
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 3.2e-09 66.2 90 45.6
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 4.2e-09 65.9 90 44.4
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 5.5e-09 65.5 89 46.1
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 5.5e-09 65.5 90 45.6
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 7.1e-09 65.1 91 45.1
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 7.1e-09 65.1 90 44.4
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 1.2e-08 64.3 90 43.3
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 2.7e-08 63.2 90 43.3
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 2.7e-08 63.2 90 43.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.6e-08 62.4 90 43.3
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 7.9e-08 61.6 88 45.5
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.0e-07 61.2 121 37.2
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.0e-07 61.2 89 44.9
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.1e-07 58.9 47 66.0
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.1e-06 57.8 45 66.7
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.9e-06 57.0 74 44.6
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.5e-06 56.6 45 60.0
COL.COLO4_30478 Corchorus olitorius HOM05D000415 ORTHO05D001916 2.5e-06 56.6 28 96.4
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 7.4e-06 55.1 88 36.4


User provided reference genes

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