Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.3e-99 365.5 184 100.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.2e-96 355.1 184 95.7
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.1e-96 354.8 184 95.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-94 349.0 182 95.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.3e-94 349.0 182 95.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.9e-94 348.6 182 95.1
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.0e-94 347.8 184 92.9
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.6e-94 347.4 184 92.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.1e-92 340.9 184 92.4
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.1e-91 338.6 184 91.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.2e-91 337.8 184 90.8
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.0e-90 335.9 184 90.8
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 7.8e-87 323.9 184 83.7
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.0e-86 323.6 184 83.7
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 3.0e-86 322.0 184 83.7
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 8.6e-86 320.5 184 83.2
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-84 316.6 184 81.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.6e-84 316.2 184 81.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 2.1e-84 315.8 184 83.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.1e-84 315.8 184 81.0
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 83.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 6.2e-84 314.3 184 82.6
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 6.2e-84 314.3 184 82.6
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 82.6
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 82.6
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.1e-83 313.5 184 83.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.3e-83 312.4 184 79.3
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.2e-82 310.1 184 81.0
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.2e-82 310.1 178 83.7
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.2e-82 310.1 184 82.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.5e-82 309.7 184 81.5
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.5e-82 309.7 184 81.0
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 2.0e-82 309.3 184 81.0
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 81.5
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 81.0
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.4e-82 308.1 184 79.9
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 4.4e-82 308.1 184 79.9
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 3.7e-81 305.1 182 80.8
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 4.9e-81 304.7 177 80.8
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.9e-81 304.7 177 80.8
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 6.4e-81 304.3 184 79.3
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-80 303.5 184 80.4
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.1e-80 303.5 184 78.3
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.1e-80 303.5 184 78.8
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 4.1e-80 301.6 184 78.3
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.2e-79 300.1 181 77.3
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.2e-79 300.1 184 79.3
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.6e-79 299.7 185 78.9
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.1e-79 299.3 184 77.7
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.1e-79 299.3 184 77.7
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.7e-79 298.9 184 77.7
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 3.5e-79 298.5 183 77.0
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 4.6e-79 298.1 180 78.9
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.8e-79 297.4 182 80.2
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.3e-78 296.6 181 76.8
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.7e-78 296.2 184 79.3
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.3e-78 295.8 182 78.6
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.9e-78 295.0 184 77.2
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 3.9e-78 295.0 184 78.3
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 5.1e-78 294.7 184 75.5
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 77.7
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 77.2
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.1e-77 293.5 181 76.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.9e-77 292.7 177 78.0
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.5e-77 292.4 182 76.4
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 4.3e-77 291.6 184 75.0
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 7.3e-77 290.8 182 76.4
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.2e-76 290.0 182 78.0
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.6e-76 289.7 184 73.9
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.6e-76 289.7 182 77.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 2.1e-76 289.3 184 73.9
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 3.6e-76 288.5 182 77.5
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.7e-76 288.1 184 73.9
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 4.7e-76 288.1 182 76.9
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.2e-76 287.7 184 75.5
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 8.1e-76 287.3 182 76.4
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.8e-75 286.2 177 75.7
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 72.8
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 4.0e-75 285.0 176 75.6
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 4.0e-75 285.0 184 72.8
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 8.9e-75 283.9 178 74.7
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.2e-74 283.5 184 72.8
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.2e-74 283.5 184 74.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.0e-74 282.7 185 74.6
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 72.7
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 69.8
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.4e-74 281.6 184 74.5
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 74.7
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 9.9e-74 280.4 185 73.0
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.3e-73 280.0 184 70.7
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.3e-73 280.0 185 74.1
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.9e-73 278.9 183 74.3
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 4.9e-73 278.1 184 70.1
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-72 276.9 180 71.7
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.1e-72 276.9 182 73.1
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.4e-72 276.6 184 70.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 71.4
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.9e-72 276.2 185 71.9
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.4e-72 275.8 184 70.1
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 5.4e-72 274.6 178 73.0
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 70.3
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 70.3
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 70.3
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 3.5e-71 271.9 187 71.1
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 3.5e-71 271.9 178 70.8
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 4.6e-71 271.6 170 78.8
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 6.0e-71 271.2 182 71.4
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 6.0e-71 271.2 178 74.2
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 6.0e-71 271.2 182 69.8
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 6.0e-71 271.2 182 69.8
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 7.8e-71 270.8 185 70.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.0e-70 270.4 185 70.8
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.3e-70 270.0 182 71.4
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.3e-70 269.2 177 74.0
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.0e-70 268.9 193 68.4
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 72.0
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 6.6e-70 267.7 179 69.3
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.9e-69 266.2 177 72.3
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.6e-68 263.1 178 69.7
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.1e-68 262.7 184 69.0
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 6.2e-68 261.2 177 66.7
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.2e-66 256.9 179 68.2
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 8.4e-65 250.8 184 66.8
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.1e-63 246.1 177 67.8
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 6.0e-63 244.6 180 65.6
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.7e-62 243.0 178 66.9
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 6.6e-62 241.1 178 65.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.1e-59 233.8 186 60.2
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.9e-59 231.1 179 63.7
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.1e-56 223.8 165 69.1
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.1e-55 219.5 182 61.0
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.7e-54 216.5 176 61.9
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-54 216.1 121 87.6
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 3.3e-53 212.2 179 58.7
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.0e-46 190.7 184 54.9
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-46 190.3 116 73.3
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.0e-42 176.4 197 50.3
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 7.1e-40 167.9 179 44.7
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 9.3e-40 167.5 159 52.8
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.7e-29 131.7 99 63.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.7e-28 129.0 109 59.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.0e-26 123.2 76 80.3
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 2.7e-15 86.3 57 78.9
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.8e-14 83.6 164 29.3
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.4e-13 79.0 59 62.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 7.4e-13 78.2 55 65.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 2.2e-09 66.6 41 80.5


User provided reference genes

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