Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 0.0e+00 1157.9 657 100.0
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.8e-301 1037.7 661 88.8
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 8.4e-301 1036.6 658 88.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.1e-291 1005.4 662 86.4
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 4.6e-291 1004.2 662 86.4
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 6.2e-288 993.8 662 86.0
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 9.0e-287 989.9 661 84.9
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.0e-261 906.7 662 81.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 6.3e-256 887.5 663 78.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 7.7e-254 880.6 663 75.7
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 7.2e-252 874.0 667 74.5
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.2e-251 873.2 663 75.7
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.8e-250 869.4 665 74.3
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-245 853.2 665 74.4
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-244 850.1 664 75.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.7e-243 845.5 666 72.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 5.2e-242 841.3 663 70.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 5.2e-242 841.3 663 77.4
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 5.2e-242 841.3 663 77.4
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.2e-241 840.1 663 72.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.5e-241 839.7 659 70.0
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 3.4e-241 838.6 662 72.8
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 5.7e-241 837.8 664 74.5
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 9.8e-241 837.0 662 73.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 6.3e-240 834.3 661 72.0
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.8e-239 832.8 658 72.8
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 4.1e-239 831.6 663 73.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.3e-237 826.6 664 72.4
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.5e-237 823.9 662 71.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 8.5e-237 823.9 662 71.9
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 3.2e-236 822.0 659 71.5
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.5e-236 821.2 664 72.7
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 3.0e-234 815.5 661 75.9
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 4.0e-234 815.1 663 74.1
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.2e-232 809.3 662 70.2
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.1e-231 805.1 662 69.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.0e-231 804.3 668 70.5
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 7.0e-231 804.3 662 72.2
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-229 798.9 668 70.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.3e-228 795.0 668 69.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 4.3e-228 795.0 660 70.6
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 6.1e-227 791.2 668 69.6
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.0e-226 790.4 668 71.1
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.8e-226 789.6 661 70.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.9e-226 787.3 639 71.4
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.6e-225 785.8 674 69.6
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 4.9e-224 781.6 673 66.6
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.0e-222 776.2 659 65.9
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.0e-218 763.8 659 67.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.0e-218 763.8 677 71.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 2.3e-218 762.7 663 65.6
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 8.3e-216 754.2 662 68.6
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 5.4e-215 751.5 661 64.9
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.3e-213 746.9 657 66.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.5e-212 743.4 660 65.0
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.3e-212 741.9 661 67.5
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.3e-212 741.9 659 68.9
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.8e-211 739.2 658 66.0
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 6.2e-211 738.0 657 65.6
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 8.1e-211 737.6 663 65.5
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.1e-210 737.3 659 64.2
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 8.9e-210 734.2 668 66.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.9e-208 728.4 667 63.6
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 8.3e-208 727.6 671 66.2
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 3.2e-207 725.7 670 67.2
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.1e-206 723.0 670 65.7
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 6.0e-206 721.5 658 64.6
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.7e-205 719.9 664 65.5
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 3.0e-205 719.2 657 61.8
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.5e-204 716.8 657 66.5
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 1.9e-204 716.5 657 66.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 3.6e-203 712.2 662 65.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.1e-202 710.7 610 66.1
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.4e-202 710.3 660 65.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.4e-202 710.3 667 61.0
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.1e-202 709.1 663 63.7
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 4.0e-202 708.8 664 62.3
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 4.4e-201 705.3 665 64.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 5.8e-201 704.9 664 62.3
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 5.8e-201 704.9 664 62.3
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 5.8e-201 704.9 666 65.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.7e-200 703.4 664 68.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.7e-200 703.4 660 66.8
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 6.4e-200 701.4 664 61.0
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.1e-199 700.7 674 62.9
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.1e-199 700.7 657 62.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.1e-199 700.7 660 66.5
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-199 699.5 612 68.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.1e-199 698.7 659 63.3
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 2.7e-198 696.0 660 61.7
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.5e-198 695.7 666 66.2
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.0e-198 694.9 661 62.9
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.8e-198 694.5 664 59.9
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.7e-197 693.3 540 72.2
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.1e-197 691.8 664 59.6
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.2e-195 687.2 664 64.8
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-195 687.2 664 60.1
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.2e-195 687.2 662 61.6
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 4.4e-193 678.7 657 62.4
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.4e-193 678.7 659 64.5
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 9.9e-193 677.6 662 61.6
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.4e-191 672.9 659 64.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.6e-190 670.2 663 61.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.0e-189 667.5 658 62.8
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.3e-189 666.4 666 64.7
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.9e-189 665.6 659 60.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.6e-188 661.8 547 70.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.6e-188 661.8 547 70.6
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-187 660.6 658 63.5
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 5.3e-186 655.2 657 60.4
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 5.8e-185 651.7 658 62.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 8.4e-184 647.9 659 59.8
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 8.4e-184 647.9 682 56.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 4.2e-183 645.6 659 57.4
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.7e-181 637.9 659 56.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 4.3e-180 635.6 664 58.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.6e-180 635.2 664 56.3
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.3e-179 634.0 659 62.1
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.6e-179 633.6 663 64.1
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.6e-179 633.6 679 58.0
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-177 627.1 659 58.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.2e-176 623.2 566 64.5
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.9e-176 622.1 670 59.7
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-175 620.9 665 57.7
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 4.2e-175 619.0 669 57.8
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 9.6e-172 607.8 670 55.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.4e-170 604.0 670 54.9
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.1e-170 602.8 657 54.6
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 7.6e-169 598.2 680 53.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.0e-168 597.8 652 56.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.9e-168 596.3 650 59.8
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.2e-167 592.4 664 54.5
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 9.7e-164 581.3 663 56.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-158 563.9 656 53.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.8e-155 553.1 682 52.5
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.5e-153 547.4 673 51.1
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.5e-153 547.4 677 52.0
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.6e-153 546.6 676 51.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-151 540.8 646 57.3
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 7.2e-151 538.5 660 50.8
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 7.9e-150 535.0 616 54.1
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.8e-149 533.9 662 51.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.0e-149 533.1 663 51.9
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 8.8e-149 531.6 676 53.7
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.1e-146 522.7 658 51.7
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 3.6e-142 509.6 660 50.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.2e-139 500.4 549 54.8
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 7.7e-137 491.9 405 76.0
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 7.7e-129 465.3 402 68.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.2e-127 458.8 674 50.6
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.6e-126 456.4 405 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 6.1e-126 455.7 667 45.4
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 4.8e-123 446.0 430 62.3
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.8e-122 444.1 624 47.4
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.0e-113 414.1 661 44.6
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-93 348.2 668 41.2
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.6e-92 344.0 539 43.2
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 9.2e-90 335.5 312 62.8
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 5.2e-85 319.7 551 44.5
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 7.6e-84 315.8 229 75.1
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.8e-75 287.0 503 42.1
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 3.8e-75 287.0 654 39.8
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.4e-61 241.9 629 35.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 6.9e-53 213.0 276 44.6
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-35 155.2 225 50.2
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.2e-34 151.0 119 63.9
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 7.0e-29 133.3 77 84.4
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 3.2e-26 124.4 153 50.3
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 3.9e-24 117.5 77 76.6
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.6e-23 114.8 109 52.3
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.3e-23 114.4 385 26.8
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 4.8e-22 110.5 126 54.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.5e-18 99.0 78 70.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-18 98.6 74 67.6
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.7e-17 94.7 58 75.9
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.4e-13 82.4 592 22.3
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 7.0e-13 80.1 60 66.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.2e-09 69.3 401 24.2
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 2.3e-08 65.1 143 43.4
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 2.0e-07 62.0 83 73.5
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 7.5e-07 60.1 73 50.7


User provided reference genes

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