Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31495 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.4e-86 322.0 148 100.0
COL.COLO4_06329 Corchorus olitorius HOM05D003523 ORTHO05D004493 6.9e-70 267.3 136 89.7
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 2.4e-62 242.3 114 95.6
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.0e-61 239.2 114 94.7
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 4.5e-61 238.0 114 93.9
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 4.5e-61 238.0 114 93.0
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 5.9e-61 237.7 114 93.9
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 2.2e-60 235.7 114 91.2
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 2.9e-60 235.3 114 92.1
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 6.5e-60 234.2 114 92.1
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 1.1e-59 233.4 114 92.1
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 1.1e-59 233.4 114 92.1
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 1.5e-59 233.0 114 90.4
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.9e-59 232.6 114 90.4
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 2.5e-59 232.3 114 91.2
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 2.5e-59 232.3 114 91.2
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 2.5e-59 232.3 114 91.2
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 4.2e-59 231.5 114 91.2
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 5.5e-59 231.1 114 89.5
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 7.2e-59 230.7 114 91.2
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 7.2e-59 230.7 114 91.2
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 7.2e-59 230.7 114 90.4
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 7.2e-59 230.7 114 92.1
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 1.2e-58 229.9 114 92.1
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.2e-58 229.9 114 90.4
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 1.2e-58 229.9 114 90.4
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 1.2e-58 229.9 114 88.6
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 1.6e-58 229.6 114 90.4
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 1.6e-58 229.6 114 90.4
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 1.6e-58 229.6 114 90.4
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 2.7e-58 228.8 114 90.4
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 3.6e-58 228.4 114 88.6
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 3.6e-58 228.4 114 89.5
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 3.6e-58 228.4 114 88.6
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 3.6e-58 228.4 114 89.5
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 4.7e-58 228.0 114 88.6
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 6.1e-58 227.6 114 87.7
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 6.1e-58 227.6 114 90.4
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 8.0e-58 227.3 114 89.5
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 8.0e-58 227.3 114 89.5
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 1.0e-57 226.9 114 90.4
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.0e-57 226.9 114 89.5
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 1.0e-57 226.9 114 88.6
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 1.4e-57 226.5 121 83.5
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 1.4e-57 226.5 114 88.6
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 1.8e-57 226.1 114 87.7
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 1.8e-57 226.1 122 86.1
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 1.8e-57 226.1 114 89.5
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 1.8e-57 226.1 114 88.6
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 1.8e-57 226.1 114 87.7
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 3.0e-57 225.3 114 86.8
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 3.0e-57 225.3 114 86.8
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 4.0e-57 224.9 114 86.8
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 4.0e-57 224.9 114 89.5
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.0e-57 224.9 114 89.5
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.0e-57 224.9 114 89.5
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 4.0e-57 224.9 114 86.0
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 5.2e-57 224.6 114 87.7
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 5.2e-57 224.6 114 88.6
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.7e-57 224.2 114 89.5
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 6.7e-57 224.2 114 88.6
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 1.2e-56 223.4 114 87.7
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 1.2e-56 223.4 114 87.7
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 1.5e-56 223.0 114 87.7
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 1.5e-56 223.0 114 87.7
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 1.5e-56 223.0 130 79.2
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 1.5e-56 223.0 114 89.5
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.5e-56 223.0 114 86.8
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 2.0e-56 222.6 114 86.8
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 2.6e-56 222.2 114 86.8
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 2.6e-56 222.2 114 86.8
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 4.4e-56 221.5 114 87.7
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 4.4e-56 221.5 114 86.8
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 4.4e-56 221.5 114 85.1
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 4.4e-56 221.5 114 86.8
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 5.7e-56 221.1 114 87.7
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 5.7e-56 221.1 114 86.8
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 5.7e-56 221.1 114 87.7
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 7.5e-56 220.7 114 86.8
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 7.5e-56 220.7 114 86.8
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 1.3e-55 219.9 114 86.8
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.3e-55 219.9 114 86.0
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 1.3e-55 219.9 114 86.8
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 1.7e-55 219.5 114 86.8
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 1.7e-55 219.5 114 86.8
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 1.7e-55 219.5 114 86.8
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 1.7e-55 219.5 114 86.8
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 1.7e-55 219.5 114 86.8
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 2.2e-55 219.2 114 85.1
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 4.8e-55 218.0 114 85.1
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 4.8e-55 218.0 114 85.1
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 6.3e-55 217.6 114 86.0
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 6.3e-55 217.6 113 87.6
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 8.2e-55 217.2 114 85.1
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 8.2e-55 217.2 114 86.0
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 1.4e-54 216.5 114 83.3
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 5.3e-54 214.5 114 85.1
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 7.0e-54 214.2 114 82.5
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 9.1e-54 213.8 114 83.3
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 1.6e-53 213.0 118 82.2
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 4.5e-53 211.5 114 83.3
MD05G1316000 Malus domestica HOM05D000005 ORTHO05D000012 3.8e-52 208.4 114 84.2
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 3.8e-52 208.4 114 80.7
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 1.5e-51 206.5 128 76.6
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 1.5e-51 206.5 114 81.6
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 2.5e-51 205.7 114 79.8
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 2.5e-51 205.7 114 79.8
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 2.1e-50 202.6 114 79.8
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 2.3e-49 199.1 135 69.6
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 4.0e-49 198.4 114 78.1
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 1.0e-44 183.7 115 72.2
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 1.3e-44 183.3 90 91.1
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 1.1e-43 180.3 114 73.7
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 1.0e-41 173.7 172 51.7
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 1.4e-41 173.3 113 73.5
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 1.7e-39 166.4 110 70.9
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 2.5e-35 152.5 111 56.8
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.8e-34 149.1 89 76.4
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 4.7e-34 148.3 111 58.6
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 2.6e-32 142.5 87 77.0
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 2.4e-30 136.0 68 88.2
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 1.7e-28 129.8 113 54.9
Medtr4g010370 Medicago truncatula HOM05D003523 ORTHO05D004493 2.8e-26 122.5 105 56.2
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.8e-25 119.8 61 85.2
GSVIVG01004520001 Vitis vinifera HOM05D003523 ORTHO05D004493 4.9e-23 111.7 54 87.0
Dinv40537 Davidia involucrata HOM05D003523 ORTHO05D004493 4.1e-22 108.6 52 92.3
Cpa.g.sc1016.1 Carica papaya HOM05D003523 ORTHO05D004493 7.8e-21 104.4 52 90.4
Lsat_1_v5_gn_5_151900 Lactuca sativa HOM05D003523 ORTHO05D004493 9.5e-19 97.4 57 80.7
Psat6g243040 Pisum sativum HOM05D003523 ORTHO05D004493 1.2e-18 97.1 113 45.1
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.1e-18 96.3 53 79.2
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 2.3e-17 92.8 61 68.9
Lsat_1_v5_gn_1_36880 Lactuca sativa HOM05D003523 ORTHO05D004493 3.1e-17 92.4 57 77.2
Lsat_1_v5_gn_2_57220 Lactuca sativa HOM05D003523 ORTHO05D004493 4.0e-17 92.0 51 84.3
Psat1g103400 Pisum sativum HOM05D003523 ORTHO05D004493 2.0e-16 89.7 58 67.2
Psat0s3867g0040 Pisum sativum HOM05D002716 ORTHO05D004493 2.6e-16 89.4 58 72.4
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 3.4e-16 89.0 118 42.4
Lsat_1_v5_gn_7_49460 Lactuca sativa HOM05D002560 ORTHO05D013255 1.1e-14 84.0 45 82.2
Psat1g103240 Pisum sativum HOM05D003523 ORTHO05D001752 7.1e-14 81.3 62 61.3
arahy.Tifrunner.gnm1.ann1.XFU5ID Arachis hypogaea HOM05D003523 ORTHO05D004493 9.2e-14 80.9 44 81.8
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 6.0e-13 78.2 38 86.8
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 9.5e-11 70.9 59 47.5
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 1.2e-08 63.9 103 36.9
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 9.9e-08 60.8 60 55.0
Lsat_1_v5_gn_9_84841 Lactuca sativa HOM05D003523 ORTHO05D000102 1.3e-07 60.5 35 77.1
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 1.9e-06 56.6 30 80.0


User provided reference genes

Program Settings