Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 3014.6 1494 100.0
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 2580.1 1498 85.4
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 2372.8 1499 79.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 2285.8 1428 79.8
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 2250.7 1497 76.9
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 2012.7 1239 81.1
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1933.3 1506 65.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1922.1 1503 64.3
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1902.5 1515 63.6
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1902.1 1510 63.6
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1894.8 1514 63.7
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1877.4 1510 62.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1874.0 1508 63.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1860.1 1522 62.7
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1834.7 1543 61.4
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1820.1 1623 58.7
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1788.5 1465 62.3
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1786.9 1540 60.8
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1786.9 1509 60.6
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1781.9 1516 60.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1777.3 1520 60.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1773.4 1517 60.5
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1771.9 1530 59.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1721.1 1516 58.9
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1718.7 1503 59.5
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1715.3 1521 59.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1701.0 1510 57.9
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1692.6 1509 57.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1684.1 1512 58.0
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1682.2 1509 57.5
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1669.4 1514 57.4
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1661.0 1513 56.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1659.8 1513 56.8
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1658.7 1512 56.6
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1651.7 1505 56.6
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1650.2 1508 57.1
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1642.1 1519 57.1
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1639.0 1513 56.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1635.5 1505 56.3
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1635.2 1522 55.3
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1632.8 1519 56.9
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1632.5 1517 56.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1627.8 1513 55.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1623.6 1502 57.2
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1620.5 1520 54.6
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1620.5 1520 54.6
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1615.9 1514 55.3
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1607.4 1517 54.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1605.1 1521 54.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1601.6 1541 54.6
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1600.1 1513 55.4
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1597.0 1202 67.1
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1595.1 1516 54.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1582.8 1505 55.4
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1569.3 1516 55.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1567.4 1514 54.4
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1551.6 1507 54.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1536.9 1531 53.2
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1535.0 1513 54.1
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1533.5 1513 54.1
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1532.7 1505 53.9
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1526.9 1497 53.4
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1526.5 1515 53.8
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1516.5 1512 53.5
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1516.1 1515 53.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1505.7 1530 51.5
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1497.6 1506 53.1
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1488.4 1516 52.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1483.0 1516 52.9
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1480.7 1504 53.2
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1479.9 1516 52.8
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1479.5 1545 51.9
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1478.0 1508 52.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1465.3 1548 51.7
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1464.9 1514 52.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1417.1 1455 51.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1391.7 1503 49.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1386.7 1294 55.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1380.2 1753 44.2
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1374.8 1506 50.4
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1367.1 1511 47.8
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1357.4 1158 60.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1325.1 1397 52.0
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1322.4 1549 48.0
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1310.8 1102 60.3
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1303.5 1562 47.1
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1287.7 1542 47.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1278.8 1052 61.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1278.5 1120 59.2
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1258.0 1133 58.1
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1249.2 1515 44.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1167.9 985 59.9
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.6e-286 990.3 1140 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 4.5e-249 865.9 1537 35.9
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.5e-249 865.9 1151 41.8
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 2.5e-244 850.1 1532 35.8
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 4.0e-242 842.8 1028 47.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.9e-239 833.9 1538 35.5
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.7e-232 810.8 590 69.2
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 6.1e-230 802.4 572 69.6
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.3e-229 800.4 661 62.0
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 8.8e-221 771.9 1020 44.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-216 758.1 1017 44.3
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 2.9e-216 756.9 1018 44.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.3e-211 739.2 983 43.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 9.1e-210 735.3 581 63.0
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.2e-206 724.9 600 61.2
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 3.1e-202 710.3 1395 32.5
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.1e-194 683.7 594 59.8
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 8.6e-160 569.3 479 61.4
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.4e-154 550.1 573 52.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.4e-141 508.1 574 49.8
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-133 482.6 528 52.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.0e-124 451.8 563 43.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.1e-120 437.2 505 47.1
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.4e-112 412.5 384 58.6
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-108 399.1 1001 28.0
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 2.1e-105 388.7 456 46.9
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-96 359.4 302 62.3
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.5e-91 340.5 318 53.5
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-84 319.7 447 45.4
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.8e-83 314.7 392 45.4
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 3.8e-75 288.1 212 64.6
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.2e-73 283.1 835 27.9
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.0e-72 278.1 546 34.1
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 7.5e-71 273.9 366 43.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.0e-67 261.2 375 38.9
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.5e-66 259.6 199 60.8
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.6e-65 256.1 284 50.0
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 3.4e-63 248.4 413 41.6
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.8e-63 246.9 293 49.1
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.3e-59 236.5 327 40.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.0e-59 235.3 227 54.6
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 8.0e-57 227.3 284 46.8
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.1e-53 216.9 311 40.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.8e-48 199.5 507 30.6
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 9.9e-47 193.7 131 66.4
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.1e-45 187.6 305 35.7
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 3.0e-43 182.2 126 68.3
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 5.1e-43 181.4 193 49.7
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 6.2e-41 174.5 219 46.1
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.2e-39 170.2 119 61.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.2e-39 170.2 185 50.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.9e-38 164.9 246 40.2
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 8.4e-38 164.1 181 49.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 8.4e-38 164.1 383 33.4
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 7.8e-36 157.5 191 45.0
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.0e-35 157.1 149 50.3
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 8.7e-35 154.1 118 62.7
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 4.3e-34 151.8 126 56.3
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 6.4e-30 137.9 116 61.2
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 7.3e-26 124.4 104 58.7
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.3e-25 123.6 199 39.7
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.8e-19 103.2 95 56.8
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 8.7e-19 100.9 95 55.8
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-18 99.0 242 28.5
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 2.0e-15 89.7 683 21.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 8.7e-11 74.3 68 52.9
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 5.6e-10 71.6 72 55.6
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 7.4e-10 71.2 101 40.6
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.6e-09 70.1 61 50.8
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 2.8e-09 69.3 196 29.6
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.8e-09 68.6 42 73.8
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.1e-08 67.4 101 39.6
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 4.0e-08 65.5 47 63.8


User provided reference genes

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