Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31096 Corchorus olitorius HOM05D002474 ORTHO05D007142 1.0e-131 473.4 240 100.0
Duzib268G0482 Durio zibethinus HOM05D002474 ORTHO05D007142 7.5e-82 307.8 209 78.0
Thecc.06G063000 Theobroma cacao HOM05D002474 ORTHO05D007142 7.5e-82 307.8 207 76.8
Gohir.D11G328800 Gossypium hirsutum HOM05D002474 ORTHO05D007142 1.4e-80 303.5 208 74.5
Gorai.007G360100 Gossypium raimondii HOM05D002474 ORTHO05D007142 1.4e-80 303.5 208 74.5
Gohir.A11G312300 Gossypium hirsutum HOM05D002474 ORTHO05D007142 3.2e-80 302.4 208 74.5
Manes.06G014900 Manihot esculenta HOM05D002474 ORTHO05D007142 5.2e-75 285.0 208 73.1
Atru.chr6.88 Acer truncatum HOM05D002474 ORTHO05D007142 1.5e-74 283.5 208 72.1
Sabra01G0175800 Salix brachista HOM05D002474 ORTHO05D007142 2.9e-73 279.3 215 70.7
GSVIVG01018503001 Vitis vinifera HOM05D002474 ORTHO05D007142 1.1e-72 277.3 208 72.1
Ca_13520_v3 Cicer arietinum L. HOM05D002474 ORTHO05D007142 1.9e-72 276.6 205 71.2
Potri.004G230600 Populus trichocarpa HOM05D002474 ORTHO05D007142 7.1e-72 274.6 206 70.4
TPR.G5978 Trifolium pratense HOM05D002474 ORTHO05D007142 2.7e-71 272.7 205 69.8
Hma1.2p1_0157F.1_g069230 Hydrangea macrophylla HOM05D002474 ORTHO05D007142 7.8e-71 271.2 210 70.0
Lalb_Chr18g0047541 Lupinus albus HOM05D002474 ORTHO05D007142 7.8e-71 271.2 210 69.5
CANSAT01G1519 Cannabis sativa HOM05D002474 ORTHO05D007142 3.0e-70 269.2 205 67.8
MELO3C016437.2 Cucumis melo HOM05D002474 ORTHO05D007142 3.0e-70 269.2 208 67.3
CsaV3_3G006770 Cucumis sativus L. HOM05D002474 ORTHO05D007142 3.9e-70 268.9 208 67.3
Medtr4g134500 Medicago truncatula HOM05D002474 ORTHO05D007142 6.6e-70 268.1 205 70.2
Peaxi162Scf00071g00020 Petunia axillaris HOM05D002474 ORTHO05D007142 6.6e-70 268.1 210 68.6
Glyma.07G271300 Glycine max HOM05D002474 ORTHO05D007142 8.6e-70 267.7 211 67.3
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.1e-69 267.3 209 67.5
Nn6g34097 Nelumbo nucifera HOM05D002474 ORTHO05D007142 2.5e-69 266.2 207 70.0
ClCG10G007610 Citrullus lanatus HOM05D002474 ORTHO05D007142 9.5e-69 264.2 208 66.3
Psat0s2555g0320 Pisum sativum HOM05D002474 ORTHO05D007142 1.2e-68 263.8 205 67.8
CAN.G492.43 Capsicum annuum HOM05D002474 ORTHO05D007142 4.7e-68 261.9 209 66.5
QL02p103729 Quercus lobata HOM05D002474 ORTHO05D007142 6.2e-68 261.5 207 68.1
Sed0015094 Sechium edule HOM05D002474 ORTHO05D007142 8.1e-68 261.2 208 66.3
Phvul.003G090600 Phaseolus vulgaris HOM05D002474 ORTHO05D007142 1.1e-67 260.8 209 66.5
Solyc10g005910.2 Solanum lycopersicum HOM05D002474 ORTHO05D007142 1.4e-67 260.4 209 66.0
Sopen10g001870 Solanum pennellii HOM05D002474 ORTHO05D007142 1.4e-67 260.4 209 66.0
PGSC0003DMG400014407 Solanum tuberosum HOM05D002474 ORTHO05D007142 1.4e-67 260.4 209 66.0
Lj4g0011201 Lotus japonicus HOM05D002474 ORTHO05D007142 1.8e-67 260.0 202 68.3
RcHm_v2.0_Chr5g0034601 Rosa chinensis HOM05D002474 ORTHO05D007142 3.1e-67 259.2 207 68.6
Haze_09959 Corylus avellana HOM05D002474 ORTHO05D007142 4.0e-67 258.8 206 68.4
Hund06555 Selenicereus undatus HOM05D002474 ORTHO05D007142 4.0e-67 258.8 211 65.9
MSTRG.16457 Avicennia marina HOM05D002474 ORTHO05D007142 2.6e-66 256.1 208 66.3
MBI03_g28951_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D007142 2.6e-66 256.1 206 66.0
CSS0044346 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D007142 3.4e-66 255.8 214 64.5
PGR142G0374 Punica granatum HOM05D002474 ORTHO05D007142 3.4e-66 255.8 210 67.1
FAN21G2400 Fragaria x ananassa HOM05D002474 ORTHO05D007142 5.8e-66 255.0 207 67.1
MD04G1042800 Malus domestica HOM05D002474 ORTHO05D007142 1.3e-65 253.8 208 63.9
FAN11G0845 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.7e-65 253.4 206 67.0
Nitab4.5_0000935g0010 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.7e-65 253.4 209 64.1
Aqoxy6G02786 Aquilegia oxysepala HOM05D002474 ORTHO05D007142 2.2e-65 253.1 207 66.2
Prupe.5G038000 Prunus persica HOM05D002474 ORTHO05D007142 2.9e-65 252.7 207 65.2
Eucgr.L00744 Eucalyptus grandis HOM05D002474 ORTHO05D007142 4.9e-65 251.9 205 66.3
SGA_v2.0_scaffold254G45227 Striga asiatica HOM05D002474 ORTHO05D007142 4.9e-65 251.9 211 62.6
Lj5A306G48 Lonicera japonica HOM05D002474 ORTHO05D007142 8.4e-65 251.1 211 64.9
Thhalv10027686m.g Eutrema salsugineum HOM05D002474 ORTHO05D007142 1.1e-64 250.8 212 63.2
PSO339G3087 Papaver somniferum HOM05D002474 ORTHO05D007142 1.1e-64 250.8 207 63.3
Cc02_g23800 Coffea canephora HOM05D002474 ORTHO05D007142 3.2e-64 249.2 209 63.2
FAN16G1529 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.2e-64 249.2 207 66.7
SalBow4G0251 Salvia bowleyana HOM05D002474 ORTHO05D007142 3.2e-64 249.2 207 64.3
Ah.08g218030 Amaranthus hybridus HOM05D000912 ORTHO05D001232 4.1e-64 248.8 210 61.9
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.6e-63 246.9 213 63.4
Carub.0007s3576 Capsella rubella HOM05D002474 ORTHO05D007142 2.1e-63 246.5 210 63.3
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 2.7e-63 246.1 213 62.4
BolC4t26229H Brassica oleracea HOM05D002474 ORTHO05D007142 2.7e-63 246.1 213 62.4
TWI14G0213 Tripterygium wilfordii HOM05D002474 ORTHO05D007142 2.7e-63 246.1 208 64.4
Oeu000165.2 Olea europaea HOM05D002474 ORTHO05D007142 3.5e-63 245.7 234 58.5
AUR62001301 Chenopodium quinoa HOM05D002474 ORTHO05D007142 4.6e-63 245.4 213 61.5
AL7G50170 Arabidopsis lyrata HOM05D002474 ORTHO05D007142 6.0e-63 245.0 215 63.3
Sc10g0008100 Simmondsia chinensis HOM05D002474 ORTHO05D007142 6.0e-63 245.0 207 61.8
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 7.8e-63 244.6 213 62.0
BraA04t16929Z Brassica rapa HOM05D002474 ORTHO05D007142 7.8e-63 244.6 213 62.0
vmacro01627 Vaccinium macrocarpon HOM05D002474 ORTHO05D007142 7.8e-63 244.6 213 62.4
VMungo1215G1553 Vigna mungo HOM05D002474 ORTHO05D007142 7.8e-63 244.6 209 62.7
EL10Ac7g18100 Beta vulgaris HOM05D002474 ORTHO05D007142 1.0e-62 244.2 210 60.5
AT5G39960 Arabidopsis thaliana HOM05D002474 ORTHO05D007142 1.7e-62 243.4 209 63.2
AUR62025683 Chenopodium quinoa HOM05D002474 ORTHO05D007142 1.7e-62 243.4 211 61.6
Sp7g02120 Schrenkiella parvula HOM05D002474 ORTHO05D007142 2.3e-62 243.0 211 62.1
Zm00001eb119500 Zea mays HOM05D002474 ORTHO05D007142 3.0e-62 242.7 208 63.0
PSO170G2680 Papaver somniferum HOM05D002474 ORTHO05D007142 3.9e-62 242.3 208 61.5
Aa31LG9G1650 Aethionema arabicum HOM05D002474 ORTHO05D007142 6.6e-62 241.5 211 61.6
CARHR262220 Cardamine hirsuta HOM05D002474 ORTHO05D007142 6.6e-62 241.5 209 62.2
Migut.B00704 Erythranthe guttata HOM05D002474 ORTHO05D007142 1.9e-61 240.0 209 62.2
Actinidia11725 Actinidia chinensis HOM05D002474 ORTHO05D007142 9.6e-61 237.7 211 61.6
HanXRQChr12g0367101 Helianthus annuus HOM05D002474 ORTHO05D007142 1.1e-59 234.2 205 61.0
SHI11365 Sapria himalayana HOM05D002474 ORTHO05D007142 3.1e-59 232.6 176 67.6
ATR0041G021 Amborella trichopoda HOM05D002474 ORTHO05D007142 7.6e-58 228.0 189 63.0
Lsat_1_v5_gn_9_123041 Lactuca sativa HOM05D002474 ORTHO05D007142 9.9e-58 227.6 180 64.4
FvH4_4g04950 Fragaria vesca HOM05D002474 ORTHO05D007142 1.3e-57 227.3 191 65.4
unitig_82.g27138 Utricularia gibba HOM05D002474 ORTHO05D007142 1.7e-57 226.9 209 60.3
ECA246G2471 Erigeron canadensis HOM05D002474 ORTHO05D007142 6.4e-57 224.9 211 58.3
HPP92_023931 Vanilla planifolia HOM05D002474 ORTHO05D007142 4.2e-56 222.2 198 60.1
SEGI_11681 Sequoiadendron giganteum HOM05D002474 ORTHO05D007142 2.3e-54 216.5 208 53.4
Cpa.g.sc2.182 Carica papaya HOM05D002474 ORTHO05D007142 3.6e-52 209.1 216 56.9
arahy.Tifrunner.gnm1.ann1.1P8C08 Arachis hypogaea HOM05D002474 ORTHO05D007142 2.4e-51 206.5 215 59.5
arahy.Tifrunner.gnm1.ann1.W79BEX Arachis hypogaea HOM05D002474 ORTHO05D007142 1.9e-48 196.8 190 63.2
Psat0s2506g0040 Pisum sativum HOM05D002474 ORTHO05D007142 7.9e-47 191.4 134 71.6
Glyma.17G002702 Glycine max HOM05D002474 ORTHO05D007142 5.6e-45 185.3 134 69.4
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 4.8e-44 182.2 153 66.0
Rhsim11G0114900 Rhododendron simsii HOM05D002474 ORTHO05D007142 8.1e-44 181.4 370 37.0
HPP92_023952 Vanilla planifolia HOM05D002474 ORTHO05D007142 6.9e-43 178.3 146 60.3
Mapoly0007s0284 Marchantia polymorpha HOM05D002474 ORTHO05D007142 9.9e-42 174.5 184 50.5
Mapoly0252s0004 Marchantia polymorpha HOM05D002474 ORTHO05D007142 9.9e-42 174.5 184 50.5
SMO172G0210 Selaginella moellendorffii HOM05D002474 ORTHO05D007142 1.7e-41 173.7 183 43.2
Pp3c21_12090 Physcomitrium patens HOM05D002474 ORTHO05D007142 2.4e-40 169.9 176 48.3
Dinv30985 Davidia involucrata HOM05D002474 ORTHO05D007142 5.5e-40 168.7 110 78.2
Psat0s6195g0040 Pisum sativum HOM05D002474 ORTHO05D007142 2.1e-39 166.8 118 71.2
Psat0s5834g0040 Pisum sativum HOM05D002474 ORTHO05D007142 1.3e-38 164.1 118 70.3
GSVIVG01023124001 Vitis vinifera HOM05D002474 ORTHO05D007142 9.0e-35 151.4 121 66.9
A02p22490 Brassica napus HOM05D002474 ORTHO05D007142 4.3e-29 132.5 99 67.7
A10p06280 Brassica napus HOM05D002474 ORTHO05D007142 6.3e-28 128.6 99 65.7
AagrBONN_evm.TU.Sc2ySwM_362.1260 Anthoceros agrestis HOM05D002474 ORTHO05D007142 9.0e-27 124.8 114 50.0
BcaC07g38021 Brassica carinata HOM05D002474 ORTHO05D007142 5.0e-25 119.0 85 71.8
BolC8t48411H Brassica oleracea HOM05D002474 ORTHO05D007142 5.0e-25 119.0 85 71.8
BcaC06g35843 Brassica carinata HOM05D002474 ORTHO05D007142 1.2e-23 114.4 85 68.2
BolC7t41497H Brassica oleracea HOM05D002474 ORTHO05D007142 1.2e-23 114.4 85 68.2
FvH4_3g20580 Fragaria vesca HOM05D002474 ORTHO05D007142 3.9e-22 109.4 86 72.1
Nitab4.5_0002158g0280 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.5e-21 107.5 85 62.4
CBR_g2954 Chara braunii HOM05D002474 ORTHO05D007142 1.3e-20 104.4 134 43.3
BolC5t30798H Brassica oleracea HOM05D002474 ORTHO05D007142 2.8e-20 103.2 85 65.9
CDE05G1525 Ceratophyllum demersum HOM05D002474 ORTHO05D007142 6.9e-19 98.6 92 54.3
DCAR_001870 Daucus carota HOM05D002474 ORTHO05D007142 6.9e-19 98.6 99 53.5
Cfa004418 Carpinus fangiana HOM05D000259 ORTHO05D000155 1.2e-18 97.8 96 56.2
BcaC05g26122 Brassica carinata HOM05D002474 ORTHO05D007142 1.3e-17 94.4 99 52.5
Atru.chr2.2040 Acer truncatum HOM05D002474 ORTHO05D007142 4.7e-15 85.9 131 43.5
A04p10150 Brassica napus HOM05D002474 ORTHO05D007142 7.9e-15 85.1 64 68.8
Nitab4.5_0001031g0150 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.4e-14 84.3 63 71.4
Cfa004419 Carpinus fangiana HOM05D002474 ORTHO05D007142 1.8e-14 84.0 63 69.8
CiPaw.05G000700 Carya illinoinensis HOM05D002474 ORTHO05D007142 3.3e-13 79.7 64 67.2
Cre03.g172250 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D007142 5.9e-10 68.9 178 29.8
Ciclev10001219m.g Citrus clementina HOM05D002474 ORTHO05D007142 9.4e-08 61.6 41 70.7
SHI11364 Sapria himalayana HOM05D002474 ORTHO05D007142 9.4e-08 61.6 43 67.4
Aa31sc172G20 Aethionema arabicum HOM05D002268 ORTHO05D006626 3.6e-07 59.7 195 24.1
Carub.0003s1142 Capsella rubella HOM05D002268 ORTHO05D006626 4.7e-07 59.3 194 24.2
BcaB06g25547 Brassica carinata HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
BcaB08g35090 Brassica carinata HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
BcaC05g29292 Brassica carinata HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
A05p37270 Brassica napus HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
C05p55740 Brassica napus HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
BolC5t34241H Brassica oleracea HOM05D002268 ORTHO05D006626 1.4e-06 57.8 191 24.6
BraA05t22523Z Brassica rapa HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
CARHR086640 Cardamine hirsuta HOM05D002268 ORTHO05D006626 1.4e-06 57.8 193 24.4
Thhalv10020226m.g Eutrema salsugineum HOM05D002268 ORTHO05D006626 2.3e-06 57.0 193 24.4
PRCOL_00000933 Prasinoderma coloniale HOM05D002268 ORTHO05D006626 2.3e-06 57.0 209 27.8
AL3G23710 Arabidopsis lyrata HOM05D002268 ORTHO05D006626 3.0e-06 56.6 193 24.4
AT3G12080 Arabidopsis thaliana HOM05D002268 ORTHO05D006626 3.0e-06 56.6 193 24.4
FAN25G2389 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.0e-06 56.6 56 60.7
Os01g0225200 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D007142 3.0e-06 56.6 58 51.7
Lj6g0027900 Lotus japonicus HOM05D002474 ORTHO05D007142 5.2e-06 55.8 43 58.1
Nitab4.5_0002158g0290 Nicotiana tabacum HOM05D002474 ORTHO05D007142 8.8e-06 55.1 31 80.6
Sp3g10310 Schrenkiella parvula HOM05D002268 ORTHO05D006626 8.8e-06 55.1 179 24.6


User provided reference genes

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