Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.1e-23 112.5 57 100.0
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-18 95.1 55 83.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.1e-18 94.0 55 81.8
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.1e-18 94.0 55 80.0
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 5.3e-18 93.6 55 80.0
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.3e-18 93.6 55 80.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.3e-18 93.6 55 80.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.3e-18 93.6 55 80.0
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 6.9e-18 93.2 55 78.2
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 6.9e-18 93.2 55 78.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 9.0e-18 92.8 55 78.2
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.2e-17 92.4 55 80.0
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.2e-17 92.4 55 78.2
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.5e-17 92.0 55 78.2
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 80.0
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 76.4
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 78.2
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 80.0
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 76.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 78.2
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 80.0
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.0e-17 91.7 55 80.0
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.6e-17 91.3 55 78.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.6e-17 91.3 56 73.2
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.6e-17 91.3 55 78.2
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 3.4e-17 90.9 55 78.2
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 3.4e-17 90.9 55 78.2
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.4e-17 90.9 55 76.4
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 78.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 74.5
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 76.4
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 4.5e-17 90.5 55 78.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.9e-17 90.1 55 74.5
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 5.9e-17 90.1 55 76.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.9e-17 90.1 55 72.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 5.9e-17 90.1 55 76.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 7.6e-17 89.7 55 78.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 7.6e-17 89.7 55 72.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.0e-16 89.4 55 72.7
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.0e-16 89.4 55 72.7
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.0e-16 89.4 55 76.4
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-16 89.4 55 80.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.0e-16 89.4 55 72.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.3e-16 89.0 55 74.5
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.3e-16 89.0 55 72.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.3e-16 89.0 55 78.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.7e-16 88.6 55 74.5
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.2e-16 88.2 55 78.2
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.2e-16 88.2 55 72.7
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.2e-16 88.2 55 74.5
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.2e-16 88.2 55 78.2
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.2e-16 88.2 55 78.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.2e-16 88.2 55 78.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.9e-16 87.8 55 72.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.9e-16 87.8 55 74.5
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.9e-16 87.8 55 76.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.9e-16 87.8 55 76.4
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.9e-16 87.8 55 72.7
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.8e-16 87.4 55 76.4
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.8e-16 87.4 55 76.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.0e-16 87.0 55 70.9
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 5.0e-16 87.0 55 74.5
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 5.0e-16 87.0 55 72.7
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 6.5e-16 86.7 55 70.9
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.5e-16 86.7 55 70.9
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.5e-16 86.7 55 70.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 8.5e-16 86.3 55 69.1
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 8.5e-16 86.3 55 69.1
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 8.5e-16 86.3 55 69.1
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 8.5e-16 86.3 55 69.1
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.1e-15 85.9 56 73.2
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.1e-15 85.9 54 77.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.1e-15 85.9 55 72.7
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.1e-15 85.9 55 70.9
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.4e-15 85.5 55 74.5
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.4e-15 85.5 55 70.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.4e-15 85.5 55 72.7
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.9e-15 85.1 55 70.9
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.9e-15 85.1 55 69.1
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.5e-15 84.7 55 70.9
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.5e-15 84.7 54 75.9
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.5e-15 84.7 55 69.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 3.2e-15 84.3 55 70.9
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.2e-15 84.0 55 72.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.2e-15 84.0 55 70.9
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.2e-15 84.0 55 70.9
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.2e-15 84.0 55 70.9
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 4.2e-15 84.0 55 69.1
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 4.2e-15 84.0 55 69.1
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 7.2e-15 83.2 55 69.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 9.3e-15 82.8 55 69.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.6e-14 82.0 55 69.1
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.1e-14 81.6 55 72.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 2.7e-14 81.3 55 67.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.7e-14 81.3 55 67.3
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 4.6e-14 80.5 55 65.5
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.6e-14 80.5 55 67.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.1e-14 80.1 52 73.1
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.1e-14 80.1 54 64.8
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 6.1e-14 80.1 55 70.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.4e-13 79.0 59 62.7
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.8e-13 78.6 55 65.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.8e-13 78.6 55 65.5
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.3e-13 78.2 55 67.3
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 5.1e-13 77.0 55 65.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 6.7e-13 76.6 55 63.6
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 8.8e-13 76.3 55 69.1
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 4.8e-11 70.5 55 67.3
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.2e-11 69.7 55 63.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.8e-08 60.8 35 82.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.5e-08 60.1 42 66.7
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.1e-07 59.3 35 82.9
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.2e-07 57.4 35 80.0
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 5.5e-07 57.0 35 74.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.2e-06 55.8 34 76.5
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 4.7e-06 53.9 34 73.5
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 6.1e-06 53.5 34 76.5
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.9e-06 53.1 34 67.6


User provided reference genes

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