Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 2.6e-144 515.4 259 100.0
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.9e-131 472.6 259 92.7
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.0e-128 462.6 259 91.1
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.6e-128 462.2 259 90.3
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.1e-126 456.8 252 92.5
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.2e-125 453.4 259 87.6
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 7.3e-123 444.1 259 86.5
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.1e-118 428.3 235 91.5
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 2.3e-113 412.5 262 80.2
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 6.8e-113 411.0 259 82.6
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 3.4e-112 408.7 259 81.1
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.8e-112 407.9 259 79.5
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 7.5e-112 407.5 253 81.8
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 6.4e-111 404.4 236 84.3
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 6.4e-111 404.4 251 81.3
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 8.3e-111 404.1 260 81.5
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 1.4e-110 403.3 259 81.5
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.4e-110 402.5 237 81.9
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 4.1e-110 401.7 259 79.9
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 7.0e-110 401.0 260 80.4
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 9.2e-110 400.6 267 77.9
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 1.6e-109 399.8 259 78.8
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 4.6e-109 398.3 252 80.2
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 6.0e-109 397.9 262 78.6
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.0e-108 397.1 254 79.9
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.7e-108 396.4 287 74.2
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 3.9e-108 395.2 260 78.8
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 8.6e-108 394.0 259 78.0
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 3.3e-107 392.1 237 80.2
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.3e-107 392.1 262 77.5
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 5.6e-107 391.3 264 76.5
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 9.5e-107 390.6 258 77.5
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.6e-106 389.8 257 76.3
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 4.7e-106 388.3 259 74.1
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 4.7e-106 388.3 258 75.6
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 4.7e-106 388.3 228 83.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 8.1e-106 387.5 257 76.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 1.1e-105 387.1 257 79.4
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.8e-105 386.3 252 77.0
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 3.1e-105 385.6 230 83.0
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 4.0e-105 385.2 257 77.0
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 5.2e-105 384.8 259 75.7
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 8.9e-105 384.0 258 74.8
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 3.4e-104 382.1 226 82.3
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.5e-104 380.9 257 76.3
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.3e-103 380.2 271 73.8
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 2.2e-103 379.4 253 75.9
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.2e-103 379.4 257 75.9
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 6.4e-103 377.9 230 80.0
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.9e-102 376.3 256 75.0
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 2.4e-102 375.9 257 76.3
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 4.1e-102 375.2 260 74.2
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 9.2e-102 374.0 257 73.5
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.6e-101 373.2 257 75.9
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 2.7e-101 372.5 241 76.8
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.3e-100 370.2 263 73.0
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.3e-100 370.2 258 75.6
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 3.9e-100 368.6 258 70.5
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 3.9e-100 368.6 229 79.0
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 6.6e-100 367.9 250 74.8
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.5e-99 366.7 262 74.0
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.5e-99 366.7 257 76.7
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 1.5e-99 366.7 257 73.9
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 3.3e-99 365.5 257 76.7
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 4.3e-99 365.2 259 71.4
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 7.3e-99 364.4 260 73.8
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.6e-98 363.2 222 82.4
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 3.6e-98 362.1 259 71.4
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.1e-97 360.5 258 68.6
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.4e-97 360.1 259 72.2
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 2.4e-97 359.4 249 72.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 8.9e-97 357.5 204 88.2
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 3.8e-95 352.1 260 69.6
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 8.4e-95 350.9 260 69.6
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 4.2e-94 348.6 258 67.4
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 7.1e-94 347.8 239 71.5
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.1e-93 346.3 260 68.1
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 2.1e-93 346.3 262 69.1
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.7e-93 345.9 245 70.6
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 3.5e-93 345.5 253 70.4
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.0e-92 344.0 245 70.6
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 3.0e-92 342.4 245 71.8
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 8.7e-92 340.9 260 67.3
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 8.7e-92 340.9 245 69.8
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.5e-91 340.1 261 67.4
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.9e-91 339.7 245 71.8
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 6.2e-90 334.7 245 71.8
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 8.1e-90 334.3 242 70.2
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 8.1e-90 334.3 245 69.0
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 4.0e-89 332.0 238 69.7
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.5e-88 330.1 245 69.8
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 7.6e-88 327.8 245 69.8
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 7.6e-88 327.8 234 70.5
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 4.9e-87 325.1 245 69.4
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 1.9e-86 323.2 245 69.0
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.9e-86 323.2 207 77.8
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 7.1e-86 321.2 245 69.0
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 3.0e-84 315.8 255 66.7
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 6.9e-81 304.7 282 59.9
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.3e-76 290.4 171 86.0
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.7e-74 282.3 172 84.3
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.1e-73 280.8 186 74.2
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 2.2e-71 273.1 170 81.8
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 8.7e-68 261.2 167 76.0
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.5e-67 260.4 172 76.2
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.5e-67 260.4 168 76.2
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.8e-65 253.4 244 56.1
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 4.0e-65 252.3 173 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 4.5e-64 248.8 219 60.3
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 3.5e-61 239.2 251 54.6
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 3.0e-60 236.1 189 63.5
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.9e-60 235.7 176 73.3
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 5.1e-44 182.2 245 44.5
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 2.0e-40 170.2 103 81.6
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 5.3e-33 145.6 192 50.5
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 5.9e-32 142.1 93 78.5
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 1.9e-30 137.1 86 75.6
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.2e-30 136.3 212 42.9
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 6.1e-29 132.1 80 76.2
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.8e-25 120.6 78 76.9
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.2e-24 117.9 90 67.8
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.3e-23 114.4 158 47.5
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.1e-22 111.3 85 61.2
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 9.4e-22 108.2 90 57.8
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 6.8e-20 102.1 58 84.5
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.3e-18 97.8 200 38.5
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 6.3e-18 95.5 57 78.9
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.1e-17 94.7 63 71.4
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.9e-15 86.7 151 35.1
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 7.2e-14 82.0 204 33.3
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.3e-12 77.0 59 69.5
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 3.7e-10 69.7 64 59.4
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.8e-09 67.4 55 65.5
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 1.9e-06 57.4 93 39.8
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 1.9e-06 57.4 93 39.8
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 2.5e-06 57.0 61 54.1


User provided reference genes

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