Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 3.8e-173 612.1 483 100.0
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 7.6e-142 508.1 374 87.2
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.3e-141 507.3 374 87.2
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 4.9e-141 505.4 374 80.7
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 8.4e-141 504.6 373 85.5
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 7.1e-140 501.5 375 86.4
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 3.2e-108 396.4 326 81.9
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 2.0e-105 387.1 342 77.2
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.4e-103 380.2 325 78.2
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.7e-102 376.7 297 82.8
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 1.7e-101 374.0 296 83.1
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 2.9e-101 373.2 295 82.7
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.5e-100 370.9 295 82.0
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.5e-100 370.9 295 82.0
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 2.5e-100 370.2 295 81.0
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 4.2e-100 369.4 295 82.0
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 5.5e-100 369.0 328 76.8
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 1.2e-99 367.9 300 79.7
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.6e-99 367.5 295 82.0
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 2.1e-99 367.1 297 80.1
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 4.7e-99 365.9 295 82.0
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 6.1e-99 365.5 325 75.7
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.4e-98 364.4 295 81.7
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 1.8e-98 364.0 295 80.7
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 3.0e-98 363.2 297 80.5
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 3.0e-98 363.2 295 80.3
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 6.8e-98 362.1 326 73.9
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 6.8e-98 362.1 295 81.0
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.2e-97 361.3 295 81.0
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 2.0e-97 360.5 295 81.0
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.6e-97 360.1 351 72.4
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 7.5e-97 358.6 295 80.3
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 1.7e-96 357.5 295 80.7
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 4.8e-96 355.9 295 80.3
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 6.3e-96 355.5 295 80.7
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 8.3e-96 355.1 326 72.7
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.1e-95 354.8 295 79.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 1.4e-95 354.4 296 80.7
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 1.8e-95 354.0 296 80.7
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 5.4e-95 352.4 295 79.7
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.2e-94 351.3 296 80.4
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.6e-94 350.9 292 80.5
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 3.5e-94 349.7 296 80.1
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 4.5e-94 349.4 318 67.0
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 1.7e-93 347.4 295 79.0
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 2.3e-93 347.1 296 79.4
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 2.9e-93 346.7 297 77.4
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 2.9e-93 346.7 326 71.5
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 2.9e-93 346.7 309 76.1
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 6.6e-93 345.5 327 72.8
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 1.1e-92 344.7 295 78.0
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.9e-92 344.0 320 72.2
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 2.5e-92 343.6 296 79.7
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 4.2e-92 342.8 328 70.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 7.2e-92 342.0 295 77.3
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 9.5e-92 341.7 346 68.2
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.6e-91 340.9 296 78.0
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.8e-91 340.1 292 79.1
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.8e-91 340.1 340 69.7
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 3.6e-91 339.7 300 75.7
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 3.6e-91 339.7 341 70.1
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 3.6e-91 339.7 297 76.1
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 3.6e-91 339.7 320 71.6
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 4.7e-91 339.3 295 76.3
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 6.1e-91 339.0 318 72.0
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.0e-90 338.2 295 77.6
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 1.8e-90 337.4 320 71.6
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.0e-90 336.7 295 60.7
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 8.9e-90 335.1 295 76.3
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.2e-89 334.7 295 75.6
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.2e-89 334.7 295 76.9
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 7.5e-89 332.0 295 75.9
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 9.8e-89 331.6 324 57.7
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 2.4e-87 327.0 310 74.5
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.2e-87 325.1 295 75.3
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 2.7e-86 323.6 295 59.0
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.5e-86 322.8 295 75.3
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 1.7e-85 320.9 325 69.5
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.3e-85 320.5 295 74.9
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 3.9e-85 319.7 295 74.9
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 5.0e-85 319.3 300 70.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 6.6e-85 318.9 295 73.9
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 6.6e-85 318.9 295 74.6
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 2.5e-84 317.0 295 73.6
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 6.1e-83 312.4 324 68.5
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 5.2e-82 309.3 296 75.0
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 6.8e-82 308.9 296 74.3
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.2e-81 308.1 296 74.7
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.2e-81 308.1 296 74.7
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 3.4e-81 306.6 293 75.1
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 5.0e-77 292.7 295 71.2
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 8.6e-77 292.0 296 72.0
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 1.1e-76 291.6 295 71.2
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 5.6e-76 289.3 292 71.6
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 2.0e-73 280.8 291 67.7
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 6.0e-70 269.2 307 51.5
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 3.0e-69 266.9 283 69.6
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 2.3e-66 257.3 211 86.7
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 3.5e-54 216.9 140 75.0
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 3.5e-54 216.9 136 76.5
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 6.6e-53 212.6 196 83.7
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.3e-52 210.3 144 68.8
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 8.4e-48 195.7 141 69.5
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.3e-45 188.3 103 91.3
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 4.9e-40 169.9 103 82.5
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 4.5e-33 146.7 262 51.1
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 3.8e-32 143.7 263 49.4
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.3e-27 128.6 265 36.6
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 4.8e-27 126.7 266 44.7
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 8.2e-27 125.9 82 74.4
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.5e-25 120.2 84 67.9
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.9e-23 114.8 74 78.4
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 6.1e-22 109.8 77 71.4
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 4.3e-20 103.6 72 75.0
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 4.3e-12 77.0 56 73.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 6.5e-08 63.2 113 29.2
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 8.5e-08 62.8 113 27.4
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 1.6e-06 58.5 31 93.5
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 2.1e-06 58.2 31 90.3
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.7e-06 57.0 107 30.8
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.9e-06 56.2 94 31.9


User provided reference genes

Program Settings