Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 2.1e-46 188.7 98 100.0
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 9.1e-34 146.7 131 64.9
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 4.7e-30 134.4 131 58.8
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.1e-23 113.2 119 53.8
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.5e-23 112.1 119 53.8
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.6e-22 109.4 119 52.1
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 3.0e-21 105.1 116 53.4
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 5.7e-20 100.9 151 42.4
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 7.4e-20 100.5 151 42.4
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.7e-19 98.2 131 46.6
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 4.8e-19 97.8 113 53.1
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 4.8e-19 97.8 117 47.0
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 8.2e-19 97.1 124 46.8
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.1e-18 96.7 111 48.6
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 1.8e-18 95.9 132 45.5
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 4.1e-18 94.7 116 50.9
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 5.3e-18 94.4 117 47.9
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 5.3e-18 94.4 124 46.8
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.0e-17 92.4 116 44.0
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.5e-17 91.7 115 47.0
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 3.5e-17 91.7 117 47.9
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 5.9e-17 90.9 132 44.7
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 7.7e-17 90.5 117 47.9
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 7.7e-17 90.5 115 48.7
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 1.3e-16 89.7 117 46.2
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 2.2e-16 89.0 123 46.3
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 2.2e-16 89.0 116 46.6
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 3.8e-16 88.2 117 46.2
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.8e-16 88.2 116 45.7
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 3.8e-16 88.2 117 44.4
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 5.0e-16 87.8 126 44.4
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 1.5e-15 86.3 116 38.8
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 2.5e-15 85.5 116 46.6
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 2.5e-15 85.5 117 45.3
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 2.5e-15 85.5 117 45.3
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 3.2e-15 85.1 112 46.4
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 9.4e-15 83.6 116 44.8
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 1.2e-14 83.2 117 45.3
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 1.2e-14 83.2 115 41.7
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 2.1e-14 82.4 116 42.2
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 2.1e-14 82.4 128 42.2
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 2.7e-14 82.0 124 38.7
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 3.6e-14 81.6 126 38.1
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 4.7e-14 81.3 112 41.1
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 4.7e-14 81.3 116 44.0
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 8.0e-14 80.5 116 39.7
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 8.0e-14 80.5 116 41.4
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 8.0e-14 80.5 112 42.9
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 1.0e-13 80.1 116 40.5
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.0e-13 80.1 124 38.7
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.0e-13 80.1 124 38.7
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 1.4e-13 79.7 116 39.7
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.4e-13 79.7 116 44.0
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 1.8e-13 79.3 115 39.1
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 3.0e-13 78.6 116 40.5
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 4.0e-13 78.2 116 38.8
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 4.0e-13 78.2 116 38.8
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 4.0e-13 78.2 116 38.8
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 4.0e-13 78.2 116 38.8
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 6.8e-13 77.4 116 39.7
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 6.8e-13 77.4 113 39.8
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.5e-12 76.3 124 41.1
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.5e-12 76.3 121 39.7
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 5.7e-12 74.3 116 37.9
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 5.7e-12 74.3 116 37.9
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 7.5e-12 73.9 111 42.3
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.7e-11 72.8 116 37.1
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 2.2e-11 72.4 116 37.1
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.8e-11 72.0 116 36.2
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 2.8e-11 72.0 131 36.6
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 8.3e-11 70.5 123 34.1
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.1e-10 70.1 116 36.2
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 1.1e-10 70.1 113 39.8
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 1.1e-10 70.1 116 36.2
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 1.4e-10 69.7 117 35.0
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 5.4e-10 67.8 114 36.0
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 9.1e-10 67.0 128 34.4
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 9.1e-10 67.0 117 36.8
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 9.1e-10 67.0 117 36.8
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 2.0e-09 65.9 111 36.9
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 4.5e-09 64.7 110 37.3
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 7.7e-09 63.9 113 36.3
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 1.0e-08 63.5 116 34.5
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 1.3e-08 63.2 115 33.0
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 5.0e-08 61.2 115 30.4
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 6.5e-08 60.8 98 38.8
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 2.7e-06 55.5 52 53.8


User provided reference genes

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