Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 0.0e+00 1168.7 593 100.0
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 5.3e-294 1013.8 599 86.3
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.8e-286 988.8 599 84.0
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.9e-283 978.8 600 83.3
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 5.1e-281 970.7 599 83.3
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 9.1e-230 800.4 599 68.1
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.2e-224 783.5 602 67.6
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.7e-223 779.6 596 67.6
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.3e-220 770.0 615 65.7
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.8e-220 768.5 609 66.3
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.9e-219 766.1 603 66.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 4.3e-219 765.0 604 66.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 4.3e-219 765.0 603 66.2
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 5.6e-219 764.6 604 66.7
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 7.3e-219 764.2 605 66.0
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.3e-217 759.2 601 65.7
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 5.2e-217 758.1 609 65.5
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 5.0e-212 741.5 605 64.3
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.6e-210 735.3 596 64.1
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.0e-209 731.9 603 64.2
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 5.2e-209 731.5 594 65.2
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 1.2e-208 730.3 597 63.3
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 2.0e-208 729.6 561 66.8
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 5.8e-208 728.0 595 63.9
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.2e-207 726.1 594 63.5
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.9e-207 725.7 597 63.1
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 4.9e-207 724.9 595 63.9
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.4e-206 722.6 596 63.1
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 7.0e-206 721.1 603 63.2
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.2e-205 720.3 634 61.8
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 3.0e-204 715.7 734 55.4
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.5e-203 713.4 604 62.6
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.2e-202 710.3 595 62.0
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.6e-202 709.9 575 65.4
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 6.2e-202 708.0 597 63.7
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 4.0e-201 705.3 605 61.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 5.2e-201 704.9 613 62.2
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 8.9e-201 704.1 621 60.7
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.2e-200 703.7 578 63.0
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.2e-200 703.7 589 62.1
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 2.0e-200 703.0 588 62.1
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 5.8e-200 701.4 603 61.0
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.4e-198 696.0 599 61.8
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 9.2e-198 694.1 555 66.1
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.5e-197 692.2 600 60.0
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.6e-197 691.8 602 59.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 6.0e-197 691.4 607 61.0
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 2.3e-196 689.5 585 61.7
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.0e-196 689.1 602 59.5
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 6.6e-196 688.0 602 59.3
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 8.6e-196 687.6 585 61.5
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 8.6e-196 687.6 585 61.5
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 8.6e-196 687.6 605 62.3
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.3e-195 685.6 602 59.6
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 3.3e-195 685.6 600 61.5
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 7.3e-195 684.5 600 61.3
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 6.2e-194 681.4 597 59.0
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.4e-193 680.2 599 59.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.8e-193 679.9 578 62.3
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.5e-192 676.8 708 54.9
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.6e-192 676.0 586 60.6
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 5.8e-192 674.9 586 60.4
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 7.6e-192 674.5 596 60.7
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 3.8e-191 672.2 623 58.3
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 3.8e-191 672.2 547 64.4
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 4.9e-191 671.8 599 59.3
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.1e-190 670.6 591 59.7
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.2e-190 669.1 722 52.4
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.2e-190 667.5 599 59.9
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.2e-189 667.2 668 55.1
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 4.6e-189 665.2 594 58.8
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 7.8e-189 664.5 697 53.5
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 3.0e-188 662.5 599 57.9
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 3.9e-188 662.1 597 59.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 6.6e-188 661.4 591 59.2
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.9e-187 659.8 609 61.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 6.2e-186 654.8 594 59.8
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.4e-185 652.9 592 57.6
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 5.2e-185 651.7 612 57.5
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 6.9e-185 651.4 600 58.3
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.4e-184 648.7 593 59.4
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 5.4e-182 641.7 620 57.9
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 7.8e-181 637.9 532 62.6
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.3e-180 637.1 602 58.1
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 1.3e-180 637.1 606 57.1
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 2.3e-180 636.3 421 78.4
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 2.1e-178 629.8 595 56.5
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 3.6e-178 629.0 616 56.7
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 6.9e-177 624.8 534 61.4
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 8.4e-175 617.8 601 56.2
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.4e-174 616.3 601 57.4
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.9e-171 606.7 595 55.1
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.9e-171 606.7 597 56.8
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.5e-171 606.3 611 55.8
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.5e-171 606.3 607 55.4
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.6e-170 603.6 356 86.8
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.1e-170 601.3 539 59.4
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 8.4e-167 591.3 610 56.2
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.6e-165 587.0 593 55.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 7.9e-165 584.7 593 54.6
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 7.6e-160 568.2 597 54.3
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 7.1e-158 561.6 667 49.2
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.2e-157 560.8 484 61.8
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 2.9e-151 539.7 594 50.8
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.6e-149 532.7 603 51.9
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.0e-148 531.2 597 53.3
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 5.0e-143 512.3 499 56.9
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.9e-134 483.8 447 61.3
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.9e-134 483.8 470 57.7
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 5.5e-134 482.3 609 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 8.0e-133 478.4 597 46.1
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 5.2e-132 475.7 605 44.1
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.2e-130 470.3 369 68.8
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 3.1e-129 466.5 397 60.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 5.3e-129 465.7 572 48.6
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.1e-126 458.0 403 61.3
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 4.8e-122 442.6 411 58.4
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.5e-118 431.0 469 53.3
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.7e-117 426.0 351 63.8
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.4e-115 419.5 366 61.5
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.8e-114 416.8 550 48.0
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.2e-112 411.4 371 59.6
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 3.7e-106 389.8 465 50.3
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 1.2e-101 374.8 494 47.4
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.4e-100 371.3 434 52.3
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.2e-97 358.6 217 81.6
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.7e-95 354.4 598 38.5
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.5e-86 322.0 467 45.0
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.9e-82 310.5 442 45.2
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 7.8e-80 302.4 228 69.7
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.4e-73 281.6 317 50.8
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 3.5e-72 276.9 212 65.1
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.8e-66 256.9 206 62.6
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 3.2e-65 253.8 194 67.5
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.1e-65 252.7 378 42.6
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.1e-65 252.7 187 65.2
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.3e-62 243.8 299 49.5
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 6.2e-61 239.6 468 40.2
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 5.3e-60 236.5 206 61.2
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.4e-57 228.4 295 45.1
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.9e-57 228.0 356 43.8
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.4e-57 227.6 207 58.5
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.6e-56 224.9 222 55.0
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-52 210.3 240 48.8
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.8e-51 206.5 283 47.3
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 2.7e-48 197.6 165 61.2
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.5e-46 191.8 197 54.3
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 6.2e-45 186.4 175 57.1
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 8.2e-45 186.0 175 57.1
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 5.1e-39 166.8 113 73.5
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 2.4e-36 157.9 142 56.3
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.4e-36 157.9 225 43.1
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.7e-34 151.8 239 43.1
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 4.5e-27 127.1 164 44.5
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 4.5e-27 127.1 105 59.0
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 5.9e-27 126.7 181 43.1
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.7e-27 126.3 122 46.7
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 2.2e-26 124.8 185 44.3
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 1.6e-24 118.6 193 42.0
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.4e-20 104.8 132 44.7
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 7.0e-20 103.2 196 37.8
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.5e-19 100.9 65 70.8
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 5.9e-19 100.1 554 24.0
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.7e-18 98.6 70 68.6
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 8.5e-18 96.3 108 50.9
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.5e-17 94.7 76 63.2
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 2.5e-17 94.7 180 36.7
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 3.6e-16 90.9 77 58.4
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.8e-15 88.6 80 55.0
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.3e-15 88.2 233 31.8
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 3.3e-14 84.3 626 22.4
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.4e-14 84.0 133 42.9
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.8e-12 78.6 74 54.1
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 4.5e-11 73.9 69 55.1
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.2e-10 71.6 47 74.5
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 6.5e-10 70.1 56 58.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 6.5e-10 70.1 53 64.2
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 8.5e-10 69.7 149 35.6
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.9e-09 68.6 209 33.0
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 2.5e-09 68.2 204 29.4
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 1.8e-07 62.0 42 73.8
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.3e-07 61.6 50 56.0
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 3.0e-07 61.2 50 62.0
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 3.0e-07 61.2 50 62.0
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 4.0e-07 60.8 279 25.4
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 4.0e-07 60.8 154 31.8
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.7e-06 57.0 182 31.9


User provided reference genes

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