Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24881 Corchorus olitorius HOM05D001013 ORTHO05D016001 7.9e-32 139.8 70 100.0
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 1.8e-15 85.5 47 89.4
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 2.3e-15 85.1 45 93.3
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 2.6e-14 81.6 45 88.9
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 2.8e-13 78.2 45 88.9
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 1.1e-12 76.3 45 84.4
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 1.1e-12 76.3 45 84.4
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 1.1e-12 76.3 45 84.4
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 1.4e-12 75.9 45 82.2
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 2.4e-12 75.1 45 82.2
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 4.1e-12 74.3 46 84.8
MD03G1177200 Malus domestica HOM05D001013 ORTHO05D004597 4.1e-12 74.3 46 87.0
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 4.1e-12 74.3 45 80.0
C02p38900 Brassica napus HOM05D001013 ORTHO05D016001 9.1e-12 73.2 45 82.2
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 9.1e-12 73.2 46 84.8
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 1.2e-11 72.8 45 80.0
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 1.6e-11 72.4 45 80.0
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 1.6e-11 72.4 45 77.8
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 1.6e-11 72.4 45 75.6
BcaC04g24043 Brassica carinata HOM05D001013 ORTHO05D004597 2.0e-11 72.0 45 80.0
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 2.0e-11 72.0 45 80.0
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 2.0e-11 72.0 45 80.0
C05p33410 Brassica napus HOM05D001013 ORTHO05D016001 2.6e-11 71.6 45 82.2
BolC5t32065H Brassica oleracea HOM05D001013 ORTHO05D016001 2.6e-11 71.6 45 82.2
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 2.6e-11 71.6 45 75.6
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 2.6e-11 71.6 45 80.0
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 4.5e-11 70.9 45 82.2
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 4.5e-11 70.9 48 79.2
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 4.5e-11 70.9 48 79.2
HanXRQChr07g0197511 Helianthus annuus HOM05D001013 ORTHO05D004597 4.5e-11 70.9 45 80.0
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 4.5e-11 70.9 46 76.1
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 4.5e-11 70.9 45 80.0
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 5.9e-11 70.5 45 77.8
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 5.9e-11 70.5 45 77.8
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 5.9e-11 70.5 45 73.3
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 5.9e-11 70.5 45 73.3
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 5.9e-11 70.5 45 80.0
Cc07_g19610 Coffea canephora HOM05D001013 ORTHO05D004597 7.7e-11 70.1 45 77.8
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 1.0e-10 69.7 46 76.1
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 1.3e-10 69.3 45 77.8
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 1.3e-10 69.3 45 75.6
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 1.3e-10 69.3 45 80.0
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 1.7e-10 68.9 45 75.6
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 1.7e-10 68.9 46 82.6
Cpa.g.sc84.69 Carica papaya HOM05D001013 ORTHO05D004597 2.2e-10 68.6 45 75.6
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 2.2e-10 68.6 46 84.8
vmacro04203 Vaccinium macrocarpon HOM05D001013 ORTHO05D004597 2.2e-10 68.6 48 75.0
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 3.8e-10 67.8 45 77.8
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 3.8e-10 67.8 45 77.8
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 3.8e-10 67.8 45 75.6
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 5.0e-10 67.4 45 73.3
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 5.0e-10 67.4 45 73.3
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 6.5e-10 67.0 60 65.0
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 6.5e-10 67.0 47 80.9
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 6.5e-10 67.0 48 79.2
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 1.1e-09 66.2 46 73.9
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 1.5e-09 65.9 45 75.6
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 1.9e-09 65.5 46 76.1
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 2.5e-09 65.1 60 63.3
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 2.5e-09 65.1 46 71.7
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 3.2e-09 64.7 46 73.9
Migut.D00593 Erythranthe guttata HOM05D001013 ORTHO05D004597 4.2e-09 64.3 46 73.9
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 4.2e-09 64.3 45 73.3
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 4.2e-09 64.3 45 73.3
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 4.2e-09 64.3 45 73.3
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 7.2e-09 63.5 45 73.3
Sc06g0004540 Simmondsia chinensis HOM05D001013 ORTHO05D004597 1.2e-08 62.8 45 73.3
Glyma.13G340300 Glycine max HOM05D001013 ORTHO05D004597 1.6e-08 62.4 45 73.3
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 1.6e-08 62.4 47 72.3
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 1.6e-08 62.4 46 65.2
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 1.6e-08 62.4 45 75.6
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 2.1e-08 62.0 46 69.6
PSO339G2827 Papaver somniferum HOM05D001013 ORTHO05D016001 2.1e-08 62.0 49 67.3
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 2.1e-08 62.0 49 67.3
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 2.7e-08 61.6 46 73.9
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 3.6e-08 61.2 46 69.6
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 3.6e-08 61.2 45 73.3
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 3.6e-08 61.2 45 73.3
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 3.6e-08 61.2 45 73.3
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 3.6e-08 61.2 45 73.3
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 3.6e-08 61.2 45 73.3
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 3.6e-08 61.2 46 73.9
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 3.6e-08 61.2 45 73.3
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 4.7e-08 60.8 49 65.3
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 4.7e-08 60.8 47 68.1
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 6.1e-08 60.5 48 68.8
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 6.1e-08 60.5 45 71.1
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 8.0e-08 60.1 46 71.7
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 8.0e-08 60.1 46 71.7
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 8.0e-08 60.1 35 80.0
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 1.0e-07 59.7 45 68.9
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 1.0e-07 59.7 49 67.3
CDE05G3370 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 1.4e-07 59.3 45 62.2
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 3.0e-07 58.2 45 66.7
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 4.0e-07 57.8 36 80.6
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 4.0e-07 57.8 47 66.0
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 6.7e-07 57.0 44 65.9
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 6.7e-07 57.0 46 67.4
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 8.8e-07 56.6 37 73.0
FAN25G0972 Fragaria x ananassa HOM05D001013 ORTHO05D004597 8.8e-07 56.6 41 70.7
Psat5g286400 Pisum sativum HOM05D001013 ORTHO05D016001 8.8e-07 56.6 45 66.7
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 1.2e-06 56.2 45 66.7
SHI29746 Sapria himalayana HOM05D001013 ORTHO05D004597 1.2e-06 56.2 39 71.8
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 1.2e-06 56.2 45 71.1
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 1.5e-06 55.8 41 68.3
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 2.0e-06 55.5 41 65.9
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 2.0e-06 55.5 31 80.6
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 2.0e-06 55.5 29 86.2
Sopen11g025670 Solanum pennellii HOM05D001013 ORTHO05D004597 2.6e-06 55.1 30 90.0
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 3.3e-06 54.7 28 89.3
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 4.4e-06 54.3 30 83.3
Zm00001eb021020 Zea mays HOM05D001013 ORTHO05D004597 7.5e-06 53.5 48 60.4


User provided reference genes

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