Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24729 Corchorus olitorius HOM05D010526 ORTHO05D007430 6.1e-143 510.8 251 100.0
COL.COLO4_04315 Corchorus olitorius HOM05D010526 ORTHO05D007430 2.5e-128 462.2 257 89.9
COL.COLO4_08488 Corchorus olitorius HOM05D010526 ORTHO05D007430 1.9e-115 419.5 211 98.1
COL.COLO4_12302 Corchorus olitorius HOM05D010526 ORTHO05D007430 1.9e-80 303.1 235 65.1
COL.COLO4_02862 Corchorus olitorius HOM05D010526 ORTHO05D007430 4.2e-51 205.7 235 43.4
COL.COLO4_20928 Corchorus olitorius HOM05D010526 ORTHO05D007430 1.0e-49 201.1 235 41.3
COL.COLO4_16673 Corchorus olitorius HOM05D010526 ORTHO05D007430 1.5e-48 197.2 256 43.8
COL.COLO4_33119 Corchorus olitorius HOM05D010526 ORTHO05D007430 8.2e-47 191.4 256 40.6
COL.COLO4_04314 Corchorus olitorius HOM05D010526 ORTHO05D007430 2.7e-42 176.4 234 42.7
COL.COLO4_08487 Corchorus olitorius HOM05D010526 ORTHO05D007430 5.0e-36 155.6 234 41.0
COL.COLO4_25373 Corchorus olitorius HOM05D007876 ORTHO05D007430 3.0e-33 146.4 246 33.3
COL.COLO4_06410 Corchorus olitorius HOM05D000096 ORTHO05D000045 1.2e-29 134.4 235 30.6
COL.COLO4_05858 Corchorus olitorius HOM05D010526 ORTHO05D007430 7.5e-24 115.2 233 30.9
COL.COLO4_29962 Corchorus olitorius HOM05D010526 ORTHO05D007430 9.8e-24 114.8 221 29.9
COL.COLO4_24730 Corchorus olitorius HOM05D010526 ORTHO05D007430 3.7e-23 112.8 197 38.1
COL.COLO4_20844 Corchorus olitorius HOM05D010526 ORTHO05D007430 7.7e-21 105.1 215 33.0
COL.COLO4_32842 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.6e-20 101.7 232 25.9
COL.COLO4_29959 Corchorus olitorius HOM05D000096 ORTHO05D000045 5.6e-19 99.0 197 28.9
COL.COLO4_36443 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.2e-18 97.8 220 28.2
TWI31G0819 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 2.1e-18 97.1 223 27.4
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 4.7e-18 95.9 253 28.1
TWI39G0063 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 6.1e-18 95.5 223 27.4
COL.COLO4_06407 Corchorus olitorius HOM05D010526 ORTHO05D007430 5.2e-17 92.4 222 29.7
COL.COLO4_34001 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.9e-17 91.7 243 21.8
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 5.7e-16 89.0 223 26.0
COL.COLO4_26649 Corchorus olitorius HOM05D007876 ORTHO05D007430 7.5e-16 88.6 160 31.2
COL.COLO4_13014 Corchorus olitorius HOM05D007876 ORTHO05D007430 9.8e-16 88.2 233 23.2
COL.COLO4_19265 Corchorus olitorius HOM05D007876 ORTHO05D007430 9.8e-16 88.2 218 27.1
COL.COLO4_33148 Corchorus olitorius HOM05D000096 ORTHO05D000045 1.7e-15 87.4 233 23.2
COL.COLO4_26587 Corchorus olitorius HOM05D007876 ORTHO05D007430 2.2e-15 87.0 231 26.0
QL07p007200 Quercus lobata HOM05D000096 ORTHO05D000045 4.9e-15 85.9 225 24.9
Hma1.2p1_0006F.1_g004680 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.3e-15 85.1 217 24.4
COL.COLO4_26648 Corchorus olitorius HOM05D010526 ORTHO05D007430 1.1e-14 84.7 124 35.5
TWI63G1000 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.1e-14 84.7 222 26.6
Aqoxy3G01099 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 1.4e-14 84.3 227 27.3
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 2.4e-14 83.6 233 26.6
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 4.1e-14 82.8 239 24.7
RcHm_v2.0_Chr5g0053321 Rosa chinensis HOM05D006849 ORTHO05D003348 7.0e-14 82.0 230 23.0
Aqoxy1G03705 Aquilegia oxysepala HOM05D012322 ORTHO05D014819 1.6e-13 80.9 220 25.0
Aqoxy4G01459 Aquilegia oxysepala HOM05D002907 ORTHO05D000174 3.5e-13 79.7 227 27.8
Aqoxy5G02969 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 3.5e-13 79.7 227 27.8
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 4.6e-13 79.3 230 22.6
TWI36G0416 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 4.6e-13 79.3 191 27.2
COL.COLO4_06619 Corchorus olitorius HOM05D007876 ORTHO05D007430 5.9e-13 79.0 213 23.0
COL.COLO4_37009 Corchorus olitorius HOM05D007876 ORTHO05D007430 7.8e-13 78.6 192 26.6
COL.COLO4_31360 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.0e-12 78.2 223 26.9
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 1.0e-12 78.2 247 25.9
TWI63G1232 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.0e-12 78.2 220 25.9
TWI73G0686 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.3e-12 77.8 223 25.6
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.7e-12 77.4 225 24.0
TWI60G0328 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 2.3e-12 77.0 223 25.1
TWI31G1318 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.9e-12 76.3 236 28.4
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.9e-12 76.3 220 25.5
COL.COLO4_25588 Corchorus olitorius HOM05D007876 ORTHO05D007430 5.0e-12 75.9 231 24.2
COL.COLO4_28688 Corchorus olitorius HOM05D007876 ORTHO05D007430 5.0e-12 75.9 220 24.5
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 6.6e-12 75.5 220 25.5
Zm00001eb076970 Zea mays HOM05D008312 ORTHO05D010433 8.6e-12 75.1 240 27.1
COL.COLO4_04225 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.5e-11 74.3 204 26.0
Aqoxy4G01036 Aquilegia oxysepala HOM05D000100 ORTHO05D000052 1.9e-11 73.9 193 27.5
COL.COLO4_20327 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.9e-11 73.9 232 21.1
TWI53G0107 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.3e-11 73.2 230 28.7
COL.COLO4_03822 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.3e-11 72.8 157 29.3
COL.COLO4_03882 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.3e-11 72.8 157 29.3
COL.COLO4_05397 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.3e-11 72.8 229 25.3
TWI53G0769 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.3e-11 72.8 221 29.0
COL.COLO4_16126 Corchorus olitorius HOM05D001671 ORTHO05D001844 9.5e-11 71.6 70 51.4
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 9.5e-11 71.6 157 30.6
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.2e-10 71.2 220 24.5
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 1.6e-10 70.9 219 26.5
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.8e-10 70.1 229 25.3
TWI38G1001 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.6e-10 69.7 235 26.0
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 4.7e-10 69.3 226 25.2
COL.COLO4_35518 Corchorus olitorius HOM05D010526 ORTHO05D007430 6.2e-10 68.9 88 38.6
COL.COLO4_36303 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.0e-10 68.6 132 28.8
COL.COLO4_08194 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.4e-09 67.8 199 23.1
Thecc.03G185000 Theobroma cacao HOM05D007876 ORTHO05D000065 1.4e-09 67.8 238 26.1
COL.COLO4_06378 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.8e-09 67.4 141 29.1
arahy.Tifrunner.gnm1.ann1.VX4W4R Arachis hypogaea HOM05D008664 ORTHO05D000174 2.3e-09 67.0 244 25.0
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-09 67.0 234 23.9
COL.COLO4_07531 Corchorus olitorius HOM05D010526 ORTHO05D007430 3.1e-09 66.6 234 27.8
TWI14G0277 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.1e-09 66.6 157 28.0
arahy.Tifrunner.gnm1.ann1.AJVM0N Arachis hypogaea HOM05D008664 ORTHO05D000174 4.0e-09 66.2 244 24.6
COL.COLO4_06380 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.0e-09 66.2 219 26.0
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 5.2e-09 65.9 244 24.6
Thecc.06G012500 Theobroma cacao HOM05D007876 ORTHO05D007430 5.2e-09 65.9 225 24.9
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 6.8e-09 65.5 195 24.1
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 8.9e-09 65.1 244 24.6
COL.COLO4_08193 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.9e-09 65.1 151 26.5
COL.COLO4_11290 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.5e-08 64.3 219 23.7
CAN.G665.22 Capsicum annuum HOM05D002907 ORTHO05D005554 2.0e-08 63.9 216 24.5
DCAR_005968 Daucus carota HOM05D002492 ORTHO05D002621 3.4e-08 63.2 221 24.0
DCAR_020287 Daucus carota HOM05D002492 ORTHO05D002621 3.4e-08 63.2 221 24.0
Hma1.2p1_0051F.1_g029450 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 3.4e-08 63.2 197 24.4
Lj1g0017581 Lotus japonicus HOM05D000353 ORTHO05D000174 3.4e-08 63.2 223 24.7
RcHm_v2.0_Chr2g0133331 Rosa chinensis HOM05D006849 ORTHO05D003348 3.4e-08 63.2 235 22.1
BcaNung03077 Brassica carinata HOM05D000824 ORTHO05D002221 4.4e-08 62.8 237 22.4
CAN.G181.47 Capsicum annuum HOM05D002907 ORTHO05D005554 4.4e-08 62.8 216 25.0
Peaxi162Scf01370g00020 Petunia axillaris HOM05D002907 ORTHO05D005554 4.4e-08 62.8 220 27.7
Aqoxy2G00023 Aquilegia oxysepala HOM05D002907 ORTHO05D013727 5.8e-08 62.4 234 25.6
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 5.8e-08 62.4 237 24.5
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 9.8e-08 61.6 241 23.7
PSO447G0118 Papaver somniferum HOM05D002907 ORTHO05D013727 9.8e-08 61.6 220 23.6
A02p29120 Brassica napus HOM05D000824 ORTHO05D002221 1.3e-07 61.2 238 22.3
COL.COLO4_37850 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.3e-07 61.2 127 27.6
Aa31LG9G7600 Aethionema arabicum HOM05D000824 ORTHO05D002221 1.7e-07 60.8 235 22.1
BraA02t07945Z Brassica rapa HOM05D000824 ORTHO05D002221 1.7e-07 60.8 238 21.8
CAN.G1427.10 Capsicum annuum HOM05D000824 ORTHO05D002221 1.7e-07 60.8 239 23.0
A09p21780 Brassica napus HOM05D000824 ORTHO05D002221 2.2e-07 60.5 239 23.0
BraA09t37781Z Brassica rapa HOM05D000824 ORTHO05D002221 2.2e-07 60.5 239 22.6
Ah.12g055800 Amaranthus hybridus HOM05D000824 ORTHO05D002221 2.9e-07 60.1 254 21.7
AT5G45400 Arabidopsis thaliana HOM05D000824 ORTHO05D002221 2.9e-07 60.1 231 23.4
Solyc08g075840.3 Solanum lycopersicum HOM05D000824 ORTHO05D002221 2.9e-07 60.1 236 22.9
Sopen08g024480 Solanum pennellii HOM05D000824 ORTHO05D002221 2.9e-07 60.1 236 22.9
PGSC0003DMG400030860 Solanum tuberosum HOM05D000824 ORTHO05D002221 2.9e-07 60.1 236 22.9
Aqoxy5G02850 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 3.7e-07 59.7 188 26.1
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 3.7e-07 59.7 195 28.2
THA.LOC104806192 Tarenaya hassleriana HOM05D000824 ORTHO05D002221 3.7e-07 59.7 237 21.5
BolC2t10676H Brassica oleracea HOM05D000824 ORTHO05D002221 4.9e-07 59.3 238 21.8
Carub.0008s0271 Capsella rubella HOM05D000824 ORTHO05D002221 4.9e-07 59.3 239 21.8
Thhalv10000781m.g Eutrema salsugineum HOM05D000824 ORTHO05D002221 4.9e-07 59.3 237 21.1
Aqoxy4G03175 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 6.4e-07 58.9 222 25.7
Aqoxy5G04189 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 6.4e-07 58.9 222 25.7
Zm00001eb290230 Zea mays HOM05D008312 ORTHO05D010433 6.4e-07 58.9 245 23.7
Aqoxy4G01383 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 8.3e-07 58.5 222 25.7
COL.COLO4_08301 Corchorus olitorius HOM05D010526 ORTHO05D007430 8.3e-07 58.5 83 34.9
C02p46200 Brassica napus HOM05D000824 ORTHO05D002221 1.1e-06 58.2 238 21.8
DCAR_010742 Daucus carota HOM05D002907 ORTHO05D000065 1.1e-06 58.2 233 24.0
DCAR_026147 Daucus carota HOM05D002492 ORTHO05D002621 1.1e-06 58.2 202 23.3
Sabra03G0069900 Salix brachista HOM05D000824 ORTHO05D002221 1.1e-06 58.2 251 21.9
Hund11146 Selenicereus undatus HOM05D000824 ORTHO05D002221 1.1e-06 58.2 236 22.9
Aa31LG6G1820 Aethionema arabicum HOM05D000824 ORTHO05D002221 1.4e-06 57.8 236 21.6
BraA09t40037Z Brassica rapa HOM05D000313 ORTHO05D000065 1.9e-06 57.4 134 29.9
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-06 57.4 252 23.0
Oeu042211.1 Olea europaea HOM05D000824 ORTHO05D002221 2.4e-06 57.0 238 21.8
TAR063G0004 Trochodendron aralioides HOM05D000824 ORTHO05D010357 2.4e-06 57.0 217 24.0
TAR091G0002 Trochodendron aralioides HOM05D000824 ORTHO05D000001 3.2e-06 56.6 217 24.0
Sp2g10350 Schrenkiella parvula HOM05D000824 ORTHO05D002221 4.1e-06 56.2 236 20.8
Carub.0006s0691 Capsella rubella HOM05D000824 ORTHO05D003555 5.4e-06 55.8 239 23.4
TWI53G1742 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 5.4e-06 55.8 182 25.3
TAR371G0671 Trochodendron aralioides HOM05D000824 ORTHO05D003555 5.4e-06 55.8 191 25.7
EL10Ac5g11968 Beta vulgaris HOM05D000824 ORTHO05D002221 7.0e-06 55.5 252 23.0
BcaB07g30884 Brassica carinata HOM05D000824 ORTHO05D002221 7.0e-06 55.5 238 22.3
RcHm_v2.0_Chr2g0133271 Rosa chinensis HOM05D006849 ORTHO05D003348 7.0e-06 55.5 212 21.7
TWI36G1694 Tripterygium wilfordii HOM05D000824 ORTHO05D003348 7.0e-06 55.5 182 24.7
COL.COLO4_09218 Corchorus olitorius HOM05D007876 ORTHO05D007430 9.2e-06 55.1 147 26.5
SHI07207 Sapria himalayana HOM05D000824 ORTHO05D002221 9.2e-06 55.1 239 20.5


User provided reference genes

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