Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 4.3e-98 361.3 179 100.0
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.5e-10 70.5 56 62.5
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.0e-10 70.1 56 62.5
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 2.0e-10 70.1 56 62.5
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.0e-10 70.1 56 62.5
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 2.0e-10 70.1 56 62.5
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.0e-10 70.1 56 62.5
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.6e-10 69.7 124 37.9
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.6e-10 69.7 56 62.5
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 2.6e-10 69.7 124 37.9
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 2.6e-10 69.7 124 40.3
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 4.4e-10 68.9 56 60.7
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 4.4e-10 68.9 56 60.7
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 62.5
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 5.7e-10 68.6 124 40.3
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 5.7e-10 68.6 56 60.7
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 7.5e-10 68.2 56 60.7
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 7.5e-10 68.2 56 60.7
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 9.8e-10 67.8 56 60.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 9.8e-10 67.8 56 60.7
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 9.8e-10 67.8 56 60.7
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.3e-09 67.4 56 58.9
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.3e-09 67.4 56 60.7
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.3e-09 67.4 56 60.7
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.3e-09 67.4 124 40.3
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.3e-09 67.4 124 37.1
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.3e-09 67.4 124 37.1
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 1.3e-09 67.4 56 58.9
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.3e-09 67.4 56 60.7
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.7e-09 67.0 56 60.7
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.7e-09 67.0 56 60.7
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.7e-09 67.0 56 60.7
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.2e-09 66.6 56 58.9
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 2.2e-09 66.6 56 58.9
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 2.2e-09 66.6 56 58.9
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 57.1
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 57.1
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 60.7
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 57.1
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 2.8e-09 66.2 56 58.9
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 3.7e-09 65.9 124 37.1
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.7e-09 65.9 56 58.9
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 3.7e-09 65.9 56 58.9
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 3.7e-09 65.9 56 58.9
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 4.9e-09 65.5 56 58.9
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 4.9e-09 65.5 56 58.9
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 4.9e-09 65.5 56 58.9
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.9e-09 65.5 56 60.7
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 55.4
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 58.9
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 55.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 55.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 58.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 58.9
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 58.9
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 6.3e-09 65.1 56 58.9
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 8.3e-09 64.7 56 57.1
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.1e-08 64.3 56 58.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.1e-08 64.3 56 55.4
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.4e-08 63.9 56 58.9
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.4e-08 63.9 123 38.2
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.8e-08 63.5 56 57.1
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.8e-08 63.5 56 57.1
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.8e-08 63.5 56 58.9
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 57.1
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 55.4
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 55.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 55.4
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 55.4
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 55.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 55.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 57.1
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.4e-08 63.2 56 57.1
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 2.4e-08 63.2 55 60.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.4e-08 63.2 55 58.2
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.1e-08 62.8 56 58.9
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 3.1e-08 62.8 56 55.4
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 4.1e-08 62.4 56 55.4
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 4.1e-08 62.4 56 55.4
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 4.1e-08 62.4 56 55.4
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.4e-08 62.0 56 55.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 5.4e-08 62.0 56 57.1
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 5.4e-08 62.0 56 57.1
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 5.4e-08 62.0 56 55.4
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 7.0e-08 61.6 56 55.4
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 7.0e-08 61.6 56 55.4
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 7.0e-08 61.6 56 55.4
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 9.1e-08 61.2 56 55.4
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 9.1e-08 61.2 56 53.6
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 2.0e-07 60.1 56 53.6
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 2.0e-07 60.1 56 53.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 2.0e-07 60.1 56 53.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 2.0e-07 60.1 56 53.6
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 2.0e-07 60.1 92 40.2
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.5e-07 59.3 116 33.6
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 3.5e-07 59.3 53 56.6
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 4.5e-07 58.9 50 60.0
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 7.7e-07 58.2 56 55.4
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.3e-06 57.4 56 50.0
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.9e-06 56.2 50 58.0


User provided reference genes

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