Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 5.8e-176 620.9 347 100.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 8.4e-159 563.9 347 91.4
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.4e-132 476.9 375 78.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.0e-128 463.0 375 74.9
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 4.5e-128 461.8 375 74.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.7e-128 461.1 375 75.2
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 5.7e-115 418.3 405 59.5
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.3e-114 417.2 375 67.7
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.4e-113 413.7 374 69.8
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 4.1e-113 412.1 348 71.6
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.5e-112 409.1 376 67.8
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.0e-111 405.2 375 66.4
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 1.5e-110 403.7 375 69.1
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 6.1e-109 398.3 375 68.0
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.8e-108 396.7 376 67.0
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 8.8e-108 394.4 347 68.9
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 8.8e-108 394.4 376 64.4
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 2.4e-105 386.3 377 63.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 2.4e-105 386.3 377 67.6
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.2e-104 384.0 377 63.1
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.3e-103 380.6 377 63.4
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.3e-103 379.8 375 63.2
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.9e-103 379.4 375 63.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 5.0e-103 378.6 375 67.2
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.6e-103 378.3 378 61.6
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.1e-102 377.5 376 63.0
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.2e-102 375.6 398 60.3
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 5.5e-102 375.2 379 65.7
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.2e-101 374.0 378 65.6
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 2.8e-101 372.9 377 62.6
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.8e-100 370.2 377 63.7
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.3e-100 369.8 377 62.6
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 3.0e-100 369.4 374 66.8
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.4e-99 365.5 378 60.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.4e-99 365.5 378 60.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.7e-98 362.5 372 62.9
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 8.3e-98 361.3 376 62.0
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.8e-97 360.1 374 63.1
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.4e-97 359.8 492 46.3
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.1e-97 359.0 363 62.3
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 5.4e-97 358.6 385 61.3
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.4e-97 358.6 370 64.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.6e-96 357.1 374 61.8
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.7e-96 356.3 375 63.7
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 5.9e-96 355.1 348 67.2
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.0e-95 354.4 367 59.4
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.3e-95 354.0 384 64.1
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 8.6e-95 351.3 376 63.0
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.9e-94 350.1 375 60.8
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 7.3e-94 348.2 369 58.3
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 8.0e-93 344.7 348 63.5
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 3.1e-92 342.8 375 59.2
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 8.9e-92 341.3 382 61.3
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.0e-91 340.1 376 61.4
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 7.5e-91 338.2 376 61.4
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 7.5e-91 338.2 372 58.6
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 9.8e-91 337.8 390 59.0
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.3e-90 337.4 370 62.7
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.2e-89 332.8 368 58.4
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 9.2e-89 331.3 370 55.9
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 2.0e-88 330.1 377 58.4
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.0e-88 330.1 336 61.6
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 2.7e-88 329.7 376 59.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.0e-87 327.8 329 61.1
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.9e-87 325.9 376 58.2
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 5.0e-87 325.5 382 60.5
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.1e-86 324.3 344 57.6
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.2e-85 318.5 377 58.6
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-83 313.9 349 63.6
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.4e-83 312.8 349 63.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.2e-81 306.2 387 57.6
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 5.4e-81 305.4 361 52.4
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.1e-80 303.5 358 55.6
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 2.7e-80 303.1 362 58.6
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 2.5e-78 296.6 382 57.3
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.2e-77 294.3 381 57.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 2.8e-77 293.1 371 53.9
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 6.2e-77 292.0 371 53.6
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 6.2e-77 292.0 371 53.6
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 3.1e-76 289.7 371 53.4
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.5e-75 287.3 382 56.0
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.5e-75 287.3 357 56.9
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 5.8e-75 285.4 382 55.8
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.7e-74 283.9 395 51.4
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.2e-74 283.5 393 50.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.9e-74 283.1 390 51.5
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.1e-73 281.2 378 52.1
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 2.1e-72 276.9 370 53.0
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 8.6e-71 271.6 368 51.1
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 2.5e-70 270.0 385 55.6
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.5e-70 270.0 379 52.0
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 4.7e-69 265.8 368 50.5
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 8.1e-69 265.0 379 51.5
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.4e-68 263.5 379 50.9
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 6.8e-68 261.9 383 50.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.2e-67 261.2 371 51.5
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.6e-67 260.0 371 50.1
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 4.4e-67 259.2 379 50.4
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.9e-66 256.5 349 53.0
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 4.9e-66 255.8 337 55.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 6.0e-64 248.8 215 65.1
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 6.6e-63 245.4 322 56.2
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.3e-62 243.0 279 54.8
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 3.3e-62 243.0 321 54.8
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.6e-61 240.7 379 50.9
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 3.8e-58 229.6 377 46.9
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.4e-57 227.6 252 54.4
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 1.2e-56 224.6 210 61.9
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 6.6e-55 218.8 273 52.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 4.3e-54 216.1 331 53.2
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 5.3e-52 209.1 169 68.0
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 6.9e-52 208.8 359 45.4
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.7e-50 204.1 369 45.3
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.9e-49 200.7 329 50.5
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.6e-48 197.6 308 49.0
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 5.1e-47 192.6 311 46.0
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.4e-41 174.5 379 40.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.5e-41 173.7 132 84.8
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.6e-40 171.0 368 40.2
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.8e-39 167.5 132 76.5
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.6e-38 161.8 132 75.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.4e-36 157.9 320 39.4
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.2e-35 154.8 320 39.4
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 7.6e-35 152.1 371 36.7
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 2.5e-30 137.1 126 65.9
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.4e-28 130.6 132 64.4
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 6.9e-28 129.0 156 47.4
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.0e-23 115.2 265 35.8
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.0e-23 115.2 226 39.4
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 4.3e-22 109.8 243 37.0
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 8.2e-21 105.5 370 33.0
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.9e-19 99.4 94 57.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 8.8e-15 85.5 59 91.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 7.4e-14 82.4 56 94.6
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 3.7e-13 80.1 56 92.9
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 1.1e-12 78.6 408 30.6
arahy.Tifrunner.gnm1.ann1.MYP07C Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-09 68.2 94 57.4
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 5.5e-09 66.2 58 58.6
Oeu023416.1 Olea europaea HOM05D005383 ORTHO05D006722 7.5e-06 55.8 38 81.6


User provided reference genes

Program Settings