Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_09043 Corchorus olitorius HOM05D002899 ORTHO05D003850 5.7e-141 504.2 250 100.0
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 7.9e-34 148.3 110 74.5
COL.COLO4_24093 Corchorus olitorius HOM05D002899 ORTHO05D003850 9.7e-32 141.4 110 73.6
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 2.0e-21 107.1 284 33.5
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 2.7e-18 96.7 118 48.3
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.7e-18 96.7 118 48.3
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 4.0e-17 92.8 118 46.6
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 4.0e-17 92.8 124 45.2
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 6.8e-17 92.0 124 45.2
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 1.2e-16 91.3 127 43.3
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.0e-16 90.5 129 45.7
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.6e-16 90.1 111 48.6
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 2.6e-16 90.1 128 43.0
TAR633G2735 Trochodendron aralioides HOM05D002899 ORTHO05D003850 4.4e-16 89.4 126 43.7
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 9.8e-16 88.2 128 43.0
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.3e-15 87.8 121 43.8
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 1.7e-15 87.4 121 43.0
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.7e-15 87.4 125 43.2
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 2.2e-15 87.0 125 43.2
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 2.2e-15 87.0 128 42.2
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 3.7e-15 86.3 129 41.9
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 3.7e-15 86.3 129 41.9
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 3.7e-15 86.3 115 46.1
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 3.7e-15 86.3 127 43.3
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 3.7e-15 86.3 129 38.8
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 4.8e-15 85.9 127 43.3
Aqoxy6G01674 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.4e-14 84.3 116 43.1
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.4e-14 84.3 126 40.5
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 1.4e-14 84.3 125 42.4
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 1.4e-14 84.3 114 43.0
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 1.8e-14 84.0 132 40.9
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.8e-14 84.0 108 42.6
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.8e-14 84.0 126 41.3
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.4e-14 83.6 113 45.1
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 2.4e-14 83.6 114 43.9
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 3.1e-14 83.2 108 42.6
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 3.1e-14 83.2 127 42.5
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 4.1e-14 82.8 133 44.4
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.1e-14 82.8 113 45.1
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 4.1e-14 82.8 126 38.9
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 5.4e-14 82.4 116 42.2
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 5.4e-14 82.4 115 40.9
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 7.0e-14 82.0 132 38.6
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 9.1e-14 81.6 126 42.1
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 9.1e-14 81.6 120 41.7
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.2e-13 81.3 107 41.1
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 1.2e-13 81.3 123 42.3
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 2.0e-13 80.5 126 41.3
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 2.0e-13 80.5 126 41.3
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 2.0e-13 80.5 126 41.3
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 2.7e-13 80.1 123 40.7
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 2.7e-13 80.1 121 41.3
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 3.5e-13 79.7 108 43.5
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 3.5e-13 79.7 123 39.8
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 4.5e-13 79.3 124 41.1
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 4.5e-13 79.3 125 38.4
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 7.7e-13 78.6 123 41.5
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 7.7e-13 78.6 114 42.1
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 1.0e-12 78.2 123 41.5
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 1.0e-12 78.2 118 39.0
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 1.0e-12 78.2 123 41.5
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 1.3e-12 77.8 315 28.6
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 1.3e-12 77.8 115 40.9
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 1.7e-12 77.4 111 41.4
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 1.7e-12 77.4 121 40.5
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 2.9e-12 76.6 124 40.3
Dinv04697 Davidia involucrata HOM05D002899 ORTHO05D003850 2.9e-12 76.6 126 40.5
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 2.9e-12 76.6 123 40.7
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 2.9e-12 76.6 120 40.8
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 2.9e-12 76.6 123 41.5
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 3.8e-12 76.3 123 41.5
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 3.8e-12 76.3 126 40.5
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 3.8e-12 76.3 125 40.8
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 3.8e-12 76.3 126 38.9
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 3.8e-12 76.3 111 43.2
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 3.8e-12 76.3 124 40.3
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 5.0e-12 75.9 122 41.0
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.5e-12 75.5 107 41.1
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.5e-12 75.5 107 41.1
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 6.5e-12 75.5 118 40.7
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 6.5e-12 75.5 118 40.7
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 6.5e-12 75.5 115 41.7
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 8.6e-12 75.1 113 44.2
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 8.6e-12 75.1 105 41.9
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 8.6e-12 75.1 119 41.2
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 8.6e-12 75.1 123 39.0
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 1.1e-11 74.7 118 41.5
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 1.1e-11 74.7 118 41.5
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 1.5e-11 74.3 126 39.7
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 1.5e-11 74.3 128 39.8
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 1.5e-11 74.3 119 38.7
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.9e-11 73.9 123 35.0
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 2.5e-11 73.6 126 39.7
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 2.5e-11 73.6 123 35.0
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 2.5e-11 73.6 126 34.1
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 2.5e-11 73.6 110 39.1
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 3.2e-11 73.2 110 38.2
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 3.2e-11 73.2 123 38.2
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 3.2e-11 73.2 117 37.6
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 4.2e-11 72.8 109 41.3
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 5.5e-11 72.4 115 41.7
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 5.5e-11 72.4 119 40.3
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 5.5e-11 72.4 117 37.6
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 9.5e-11 71.6 109 40.4
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 9.5e-11 71.6 112 42.0
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 9.5e-11 71.6 112 42.0
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.2e-10 71.2 117 38.5
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 1.2e-10 71.2 105 40.0
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 1.2e-10 71.2 128 35.9
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 1.2e-10 71.2 123 37.4
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 1.2e-10 71.2 123 37.4
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 1.6e-10 70.9 105 40.0
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 2.1e-10 70.5 125 37.6
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 2.8e-10 70.1 105 35.2
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 2.8e-10 70.1 120 35.8
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 3.6e-10 69.7 107 42.1
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 3.6e-10 69.7 123 38.2
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 3.6e-10 69.7 123 37.4
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 4.7e-10 69.3 113 41.6
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 4.7e-10 69.3 118 39.8
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 6.1e-10 68.9 123 38.2
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 6.1e-10 68.9 118 39.8
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 6.1e-10 68.9 105 39.0
Aqoxy1G02235 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 8.0e-10 68.6 108 38.0
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 8.0e-10 68.6 107 40.2
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 8.0e-10 68.6 124 39.5
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.0e-09 68.2 126 35.7
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 1.4e-09 67.8 111 36.0
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.8e-09 67.4 118 39.0
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 1.8e-09 67.4 116 35.3
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 2.3e-09 67.0 104 38.5
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 2.3e-09 67.0 104 38.5
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 2.3e-09 67.0 104 38.5
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.3e-09 67.0 109 36.7
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 3.0e-09 66.6 127 33.9
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 3.0e-09 66.6 123 30.9
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 6.8e-09 65.5 104 37.5
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 6.8e-09 65.5 104 37.5
AUR62031080 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.8e-09 65.5 109 33.0
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 8.8e-09 65.1 107 41.1
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 2.0e-08 63.9 318 27.0
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 3.4e-08 63.2 115 37.4
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 7.5e-08 62.0 130 33.1
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 1.3e-07 61.2 232 28.4
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 1.3e-07 61.2 106 36.8
COL.COLO4_00251 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.3e-07 61.2 66 59.1
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.7e-07 60.8 112 36.6
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 2.2e-07 60.5 119 36.1
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 3.7e-07 59.7 108 36.1
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 1.1e-06 58.2 132 32.6
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 1.8e-06 57.4 108 34.3
Prupe.7G002000 Prunus persica HOM05D002899 ORTHO05D003850 5.4e-06 55.8 96 36.5


User provided reference genes

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