Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.5e-80 302.0 144 100.0
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.0e-78 296.6 142 98.6
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 7.5e-53 210.7 109 86.2
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.7e-52 209.5 109 86.2
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 1.7e-52 209.5 109 86.2
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 2.4e-51 205.7 109 86.2
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.7e-50 202.2 116 83.6
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 8.0e-47 190.7 109 78.0
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 4.0e-46 188.3 109 76.1
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 8.9e-46 187.2 109 75.2
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.5e-45 186.4 109 78.9
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 2.6e-45 185.7 109 74.3
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.4e-45 185.3 109 76.1
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 4.4e-45 184.9 109 76.1
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 4.4e-45 184.9 109 76.1
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.4e-45 184.9 109 75.2
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 7.5e-45 184.1 109 74.3
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 7.5e-45 184.1 109 74.3
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.3e-44 183.3 109 73.4
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 1.3e-44 183.3 109 77.1
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.7e-44 183.0 109 75.2
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.7e-44 183.0 109 73.4
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.2e-44 182.6 108 74.1
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.2e-44 182.6 109 73.4
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 2.2e-44 182.6 109 71.6
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.7e-44 181.8 109 73.4
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 3.7e-44 181.8 109 71.6
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 4.9e-44 181.4 109 71.6
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.3e-44 180.6 109 73.4
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.1e-43 180.3 109 72.5
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.1e-43 180.3 109 72.5
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.4e-43 179.9 109 73.4
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.9e-43 179.5 109 71.6
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.9e-43 179.5 109 71.6
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.4e-43 179.1 109 70.6
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 2.4e-43 179.1 109 71.6
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.2e-43 178.7 109 70.6
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.2e-43 178.7 109 70.6
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 5.4e-43 177.9 109 72.5
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 5.4e-43 177.9 109 71.6
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 7.0e-43 177.6 109 72.5
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 9.2e-43 177.2 109 73.4
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.2e-42 176.8 109 74.3
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.2e-42 176.8 109 71.6
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 2.7e-42 175.6 132 61.4
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 3.5e-42 175.3 109 72.5
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 4.6e-42 174.9 109 71.6
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 4.6e-42 174.9 109 68.8
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 4.6e-42 174.9 110 68.2
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 6.0e-42 174.5 109 72.5
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.3e-41 173.3 110 72.7
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.7e-41 172.9 109 71.6
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.3e-41 172.6 109 69.7
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 3.0e-41 172.2 109 71.6
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 3.9e-41 171.8 109 70.6
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 5.0e-41 171.4 109 69.7
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 5.0e-41 171.4 110 70.0
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 6.6e-41 171.0 109 69.7
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 8.6e-41 170.6 109 67.9
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.5e-40 169.9 109 68.8
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.9e-40 169.5 109 68.8
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 2.5e-40 169.1 109 67.9
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 2.5e-40 169.1 109 68.8
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 2.5e-40 169.1 109 68.8
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 2.5e-40 169.1 109 68.8
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 4.3e-40 168.3 109 68.8
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 4.3e-40 168.3 109 70.6
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 5.6e-40 167.9 132 60.6
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 5.6e-40 167.9 109 69.7
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 5.6e-40 167.9 109 64.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 5.6e-40 167.9 110 70.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 7.3e-40 167.5 101 73.3
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 9.5e-40 167.2 109 69.7
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-39 166.8 109 69.7
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-39 166.4 109 68.8
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.6e-39 166.4 109 68.8
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.6e-39 166.4 109 67.0
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.6e-39 166.4 109 65.1
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.6e-39 166.4 109 69.7
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.1e-39 166.0 109 65.1
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.1e-39 166.0 109 66.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.8e-39 165.6 109 65.1
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-39 165.2 109 68.8
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 3.6e-39 165.2 109 68.8
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 3.6e-39 165.2 109 63.3
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 3.6e-39 165.2 110 67.3
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.7e-39 164.9 109 67.9
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 4.7e-39 164.9 109 65.1
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 6.2e-39 164.5 109 65.1
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 8.1e-39 164.1 108 64.8
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.4e-38 163.3 109 67.0
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.4e-38 163.3 109 64.2
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 1.8e-38 162.9 109 67.9
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.3e-38 162.5 109 67.9
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 2.3e-38 162.5 109 66.1
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 4.0e-38 161.8 109 67.0
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 4.0e-38 161.8 109 67.0
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 4.0e-38 161.8 109 67.0
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.2e-38 161.4 109 67.0
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 2.6e-37 159.1 99 70.7
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.4e-37 158.7 108 65.7
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 4.4e-37 158.3 122 63.9
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 4.4e-37 158.3 109 65.1
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 7.5e-37 157.5 109 62.4
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 9.9e-37 157.1 109 63.3
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 9.9e-37 157.1 109 63.3
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 1.3e-36 156.8 109 64.2
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.3e-36 156.8 107 63.6
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.2e-36 156.0 109 61.5
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 6.4e-36 154.5 109 66.1
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 8.3e-36 154.1 110 60.9
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 8.3e-36 154.1 108 61.1
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 7.1e-35 151.0 107 59.8
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.6e-34 149.8 108 61.1
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.6e-34 149.8 109 60.6
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 2.7e-34 149.1 109 62.4
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 3.5e-34 148.7 107 61.7
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.5e-34 148.7 107 62.6
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 6.0e-34 147.9 107 62.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.0e-34 147.9 108 59.3
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 7.8e-34 147.5 109 58.7
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 7.8e-34 147.5 109 58.7
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 7.8e-34 147.5 110 58.2
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-33 146.0 108 58.3
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 2.3e-33 146.0 108 58.3
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 3.9e-33 145.2 108 59.3
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 5.1e-33 144.8 109 57.8
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 5.1e-33 144.8 115 54.8
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 8.6e-33 144.1 108 58.3
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.6e-33 144.1 108 60.2
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.1e-32 143.7 109 57.8
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-32 143.3 106 57.5
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.5e-32 142.5 108 57.4
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.1e-31 139.4 109 56.0
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 6.2e-31 137.9 108 55.6
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 8.1e-31 137.5 106 64.2
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 2.4e-30 136.0 109 57.8
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 4.0e-30 135.2 108 58.3
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.6e-29 132.5 108 59.3
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-29 132.5 108 59.3
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-29 132.5 108 59.3
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.6e-29 132.5 108 59.3
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 2.6e-29 132.5 108 59.3
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 2.6e-29 132.5 108 59.3
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 5.8e-29 131.3 125 52.8
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 7.6e-29 131.0 108 58.3
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 8.4e-28 127.5 113 53.1
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.2e-27 125.6 138 47.8
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 4.1e-27 125.2 107 57.0
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-26 123.6 89 59.6
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.6e-26 123.2 107 52.3
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 2.7e-26 122.5 109 51.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.7e-25 119.8 112 51.8
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.1e-25 118.2 108 51.9
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 3.3e-24 115.5 105 50.5
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 5.6e-24 114.8 75 64.0
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 2.8e-23 112.5 109 47.7
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.1e-22 110.5 107 47.7
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 3.1e-22 109.0 115 47.8
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.2e-22 108.2 85 52.9
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 9.0e-22 107.5 102 49.0
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.2e-21 107.1 108 47.2
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.0e-21 106.3 87 56.3
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 4.4e-21 105.1 74 63.5
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 3.8e-20 102.1 108 43.5
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-19 100.1 78 61.5
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 3.2e-19 99.0 109 43.1
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 5.4e-19 98.2 67 64.2
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.5e-16 90.1 109 43.1
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 2.1e-15 86.3 53 71.7
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.4e-14 82.8 82 43.9
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.0e-13 79.7 68 57.4
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 1.1e-11 73.9 50 66.0
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 5.1e-09 65.1 53 49.1


User provided reference genes

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