Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 0.0e+00 1196.4 578 100.0
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 0.0e+00 1145.2 578 94.8
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 0.0e+00 1122.8 578 93.4
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 0.0e+00 1118.6 578 93.1
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 0.0e+00 1118.2 578 93.1
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 0.0e+00 1083.2 571 90.4
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 1.6e-311 1072.0 573 89.2
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 2.8e-308 1061.2 578 87.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.1e-307 1057.7 574 89.0
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 5.3e-307 1057.0 557 90.1
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 5.8e-306 1053.5 557 89.0
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 2.9e-305 1051.2 578 86.3
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 2.1e-303 1045.0 578 86.3
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.1e-301 1039.3 555 87.9
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 2.5e-301 1038.1 578 85.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 4.3e-301 1037.3 574 86.9
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.3e-300 1035.8 561 87.0
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 3.4e-298 1027.7 558 85.8
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 5.0e-297 1023.8 571 84.6
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 1.1e-296 1022.7 567 86.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.9e-296 1021.9 556 87.1
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 4.6e-295 1017.3 578 84.4
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.3e-294 1015.0 562 85.8
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 5.1e-294 1013.8 555 86.1
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 8.7e-294 1013.1 575 85.6
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.3e-292 1006.9 562 85.8
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.1e-291 1006.1 556 85.4
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.1e-291 1006.1 561 84.8
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.8e-291 1005.4 534 89.0
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.2e-290 1002.7 558 84.2
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.0e-289 999.6 558 85.1
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.9e-289 998.0 598 80.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.9e-289 998.0 558 84.2
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 8.5e-289 996.5 524 89.1
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 5.5e-288 993.8 557 83.7
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 7.2e-288 993.4 563 83.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 6.1e-287 990.3 554 83.8
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 6.1e-287 990.3 557 83.3
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.4e-286 989.2 558 83.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.0e-286 988.0 589 79.5
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 3.0e-286 988.0 558 83.0
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 6.7e-286 986.9 548 84.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 8.8e-286 986.5 571 82.3
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 7.4e-285 983.4 571 82.0
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.7e-284 982.2 551 82.8
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.8e-284 981.5 571 81.3
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 4.8e-284 980.7 605 77.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 4.1e-283 977.6 586 81.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 4.1e-283 977.6 573 82.0
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 5.9e-282 973.8 579 78.9
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.7e-281 972.2 573 81.8
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.7e-281 972.2 579 78.9
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 8.5e-281 969.9 579 79.8
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.1e-280 969.5 580 78.6
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.1e-280 969.5 578 79.2
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 4.2e-280 967.6 551 81.9
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 9.4e-280 966.5 583 79.2
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.2e-279 966.1 558 82.3
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.4e-278 962.6 578 77.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 8.8e-278 959.9 549 82.7
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.0e-277 958.7 579 78.9
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 2.0e-277 958.7 573 80.1
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 7.4e-277 956.8 548 81.9
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.7e-276 954.5 557 81.5
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 4.8e-276 954.1 577 78.7
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 2.4e-275 951.8 588 79.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.2e-274 949.5 536 84.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.6e-274 949.1 594 76.3
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.5e-272 940.6 562 77.6
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.6e-271 939.1 572 77.4
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 3.6e-271 937.9 533 83.9
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 6.1e-271 937.2 555 78.2
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.0e-270 936.4 571 77.9
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-270 936.0 571 77.6
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.8e-270 935.6 558 79.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 4.0e-270 934.5 549 79.2
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 5.2e-270 934.1 551 79.9
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 8.8e-270 933.3 535 81.3
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.0e-269 932.2 551 79.3
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.6e-269 931.8 566 77.2
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.4e-269 931.0 556 78.2
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 5.7e-269 930.6 552 77.5
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.2e-268 928.7 578 75.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.2e-268 928.7 552 77.5
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.8e-268 928.3 558 79.4
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 4.8e-268 927.5 517 84.1
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.8e-268 927.5 535 84.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 6.3e-268 927.2 549 80.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.8e-267 925.6 573 77.3
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.1e-267 924.9 566 76.9
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 9.1e-267 923.3 557 78.5
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.6e-266 922.5 555 77.7
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.3e-265 919.5 556 78.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.8e-265 917.9 550 76.4
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 6.5e-265 917.1 576 76.0
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 7.2e-264 913.7 574 76.5
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 7.2e-264 913.7 544 82.4
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.1e-263 912.1 572 76.4
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 6.1e-263 910.6 572 76.2
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 6.1e-263 910.6 574 76.3
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 6.1e-263 910.6 572 76.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.0e-262 909.8 572 76.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.8e-260 901.7 578 74.2
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-259 899.8 558 76.5
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.8e-259 899.0 557 76.8
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 4.1e-259 897.9 557 76.7
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 4.1e-259 897.9 557 76.8
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 4.1e-259 897.9 557 76.7
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.2e-257 892.1 561 76.8
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.0e-257 891.0 537 79.1
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.9e-256 889.0 559 76.2
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 4.9e-252 874.4 542 77.7
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.3e-249 865.5 518 78.4
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 4.3e-248 861.3 544 75.4
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 7.3e-248 860.5 495 82.6
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 9.8e-245 850.1 587 72.7
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.4e-243 845.5 554 73.3
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 5.4e-243 844.3 541 74.7
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.3e-241 839.0 515 77.5
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 8.0e-239 830.5 517 76.0
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-236 822.4 557 72.5
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 4.6e-234 814.7 566 69.6
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.3e-225 786.6 560 67.9
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.6e-223 778.5 478 77.6
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 4.6e-202 708.4 416 81.5
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 5.6e-200 701.4 583 60.2
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.8e-199 699.1 581 61.3
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 3.6e-199 698.7 553 62.7
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.8e-198 696.4 544 63.2
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.7e-162 576.2 332 83.4
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.1e-146 523.5 339 74.9
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.8e-142 510.4 359 70.2
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.0e-140 502.3 278 83.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.4e-137 494.2 263 91.6
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.2e-127 460.3 323 69.3
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 3.5e-125 453.0 512 51.0
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 9.5e-115 418.3 294 70.4
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.6e-106 391.0 217 78.8
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 9.9e-104 381.7 293 63.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 6.0e-101 372.5 288 64.6
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.1e-100 369.4 217 80.6
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.3e-91 339.0 258 68.6
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 5.6e-83 312.8 579 34.0
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.1e-78 298.5 198 73.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.1e-77 294.3 201 71.6
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.3e-67 260.4 145 79.3
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 4.6e-61 240.0 457 31.9
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.3e-58 231.9 129 81.4
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.5e-54 217.6 228 46.5
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.0e-37 159.5 124 61.3
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.3e-36 157.9 119 58.8
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.3e-34 152.1 138 55.8
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 3.5e-32 144.1 100 69.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.5e-30 136.7 106 59.4
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 6.1e-29 133.3 173 43.9
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 5.0e-23 113.6 121 52.9
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.5e-22 111.3 54 85.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.8e-17 95.1 57 75.4
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 3.3e-14 84.3 80 50.0
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.7e-10 70.9 43 72.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.1e-06 59.3 70 34.3
Gorai.004G005700 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.5e-06 58.9 165 21.2
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 1.5e-06 58.9 63 36.5
Thhalv10017563m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 3.3e-06 57.8 55 40.0
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 4.3e-06 57.4 60 38.3
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 5.6e-06 57.0 53 43.4
TWI75G0506 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 5.6e-06 57.0 102 32.4
CsaV3_5G032780 Cucumis sativus L. HOM05D000082 ORTHO05D000038 7.3e-06 56.6 54 35.2
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 7.3e-06 56.6 52 44.2
ATR0691G212 Amborella trichopoda HOM05D000082 ORTHO05D000038 9.5e-06 56.2 54 37.0
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 9.5e-06 56.2 55 32.7
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 9.5e-06 56.2 77 28.6
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 9.5e-06 56.2 77 28.6
Gohir.A13G018600 Gossypium hirsutum HOM05D000082 ORTHO05D001639 9.5e-06 56.2 60 36.7
Phvul.007G097800 Phaseolus vulgaris HOM05D000459 ORTHO05D000038 9.5e-06 56.2 59 35.6


User provided reference genes

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