Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0822 Ceratophyllum demersum HOM05D001251 ORTHO05D004135 9.2e-156 553.5 280 100.0
CDE04G0747 Ceratophyllum demersum HOM05D001251 ORTHO05D004135 1.2e-131 473.4 276 88.0
Nn1g00457 Nelumbo nucifera HOM05D001251 ORTHO05D004135 7.8e-38 161.8 308 40.3
Duzib138G1188 Durio zibethinus HOM05D001251 ORTHO05D004135 1.1e-34 151.4 306 38.6
TAR374G0209 Trochodendron aralioides HOM05D001251 ORTHO05D004135 2.6e-33 146.7 313 38.7
MBI12_g27877_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 3.4e-33 146.4 310 38.4
Gohir.D12G121100 Gossypium hirsutum HOM05D001251 ORTHO05D004135 7.5e-33 145.2 310 39.0
Gorai.008G132000 Gossypium raimondii HOM05D001251 ORTHO05D004135 7.5e-33 145.2 310 39.0
Cfa003724 Carpinus fangiana HOM05D001251 ORTHO05D004135 1.3e-32 144.4 295 36.3
Eucgr.D02651 Eucalyptus grandis HOM05D001251 ORTHO05D004135 1.3e-32 144.4 305 38.0
Potri.014G106800 Populus trichocarpa HOM05D001251 ORTHO05D004135 2.9e-32 143.3 311 37.3
Duzib133G0065 Durio zibethinus HOM05D001251 ORTHO05D004135 3.7e-32 142.9 243 44.0
arahy.Tifrunner.gnm1.ann1.0U0SSW Arachis hypogaea HOM05D001251 ORTHO05D004135 4.9e-32 142.5 315 36.8
arahy.Tifrunner.gnm1.ann1.J7VJ5I Arachis hypogaea HOM05D001251 ORTHO05D004135 6.4e-32 142.1 315 36.5
Ciclev10018964m.g Citrus clementina HOM05D001251 ORTHO05D004135 8.3e-32 141.7 313 36.7
Gohir.A12G117500 Gossypium hirsutum HOM05D001251 ORTHO05D004135 1.1e-31 141.4 310 37.7
Cc02_g39990 Coffea canephora HOM05D001251 ORTHO05D004135 1.4e-31 141.0 308 36.7
CSS0039199 Camellia sinensis var. sinensis HOM05D001251 ORTHO05D004135 3.2e-31 139.8 287 39.7
Haze_15754 Corylus avellana HOM05D001251 ORTHO05D004135 3.2e-31 139.8 305 36.1
Hma1.2p1_0074F.1_g038840 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 4.1e-31 139.4 303 36.0
Potri.002G180800 Populus trichocarpa HOM05D001251 ORTHO05D004135 4.1e-31 139.4 320 36.9
Atru.chr5.788 Acer truncatum HOM05D001251 ORTHO05D004135 2.7e-30 136.7 322 36.6
Sabra14G0079000 Salix brachista HOM05D001251 ORTHO05D004135 2.7e-30 136.7 304 36.8
Thecc.01G332000 Theobroma cacao HOM05D001251 ORTHO05D004135 2.7e-30 136.7 310 35.8
Dinv34262 Davidia involucrata HOM05D001251 ORTHO05D004135 3.5e-30 136.3 314 37.3
Hund16759 Selenicereus undatus HOM05D001251 ORTHO05D004135 4.6e-30 136.0 310 34.8
Glyma.03G261800 Glycine max HOM05D001251 ORTHO05D004135 1.3e-29 134.4 302 38.1
COL.COLO4_23060 Corchorus olitorius HOM05D001251 ORTHO05D004135 1.7e-29 134.0 222 42.3
Gohir.A11G101800 Gossypium hirsutum HOM05D001251 ORTHO05D004135 1.7e-29 134.0 312 37.2
MBI04_g18999_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 1.7e-29 134.0 331 33.8
QL08p047700 Quercus lobata HOM05D001251 ORTHO05D004135 2.3e-29 133.7 309 36.2
VMungo1309G2431 Vigna mungo HOM05D001251 ORTHO05D004135 5.1e-29 132.5 297 37.7
Cpa.g.sc57.78 Carica papaya HOM05D001251 ORTHO05D004135 6.6e-29 132.1 310 36.5
Migut.N01518 Erythranthe guttata HOM05D001251 ORTHO05D004135 6.6e-29 132.1 318 38.1
Gorai.007G113900 Gossypium raimondii HOM05D001251 ORTHO05D004135 6.6e-29 132.1 315 36.5
Lj3g0020484 Lotus japonicus HOM05D001251 ORTHO05D004135 6.6e-29 132.1 304 37.5
Glyma.07G048500 Glycine max HOM05D001251 ORTHO05D004135 8.6e-29 131.7 299 36.5
Glyma.19G260900 Glycine max HOM05D001251 ORTHO05D004135 1.1e-28 131.3 300 38.0
Gohir.D11G106400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 1.5e-28 131.0 315 37.5
Prupe.2G200400 Prunus persica HOM05D001251 ORTHO05D004135 1.5e-28 131.0 306 36.3
Actinidia01529 Actinidia chinensis HOM05D001251 ORTHO05D004135 1.9e-28 130.6 295 37.6
MSTRG.4794 Avicennia marina HOM05D001251 ORTHO05D004135 4.3e-28 129.4 313 35.8
AUR62004570 Chenopodium quinoa HOM05D001251 ORTHO05D004135 4.3e-28 129.4 311 33.4
VMungo0331G1277 Vigna mungo HOM05D001251 ORTHO05D004135 4.3e-28 129.4 301 36.5
Gorai.008G131800 Gossypium raimondii HOM05D001251 ORTHO05D004135 5.6e-28 129.0 319 35.4
SalBow5G5002 Salvia bowleyana HOM05D001251 ORTHO05D004135 7.3e-28 128.6 312 36.9
Gohir.A12G117400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 1.2e-27 127.9 320 35.9
CiPaw.01G085700 Carya illinoinensis HOM05D001251 ORTHO05D004135 1.6e-27 127.5 312 35.6
Gohir.D12G121000 Gossypium hirsutum HOM05D001251 ORTHO05D004135 1.6e-27 127.5 311 36.0
Manes.01G239000 Manihot esculenta HOM05D001251 ORTHO05D004135 2.1e-27 127.1 289 36.7
TPR.G4678 Trifolium pratense HOM05D001251 ORTHO05D004135 2.8e-27 126.7 302 37.4
SGA_v2.0_scaffold232G43523 Striga asiatica HOM05D001251 ORTHO05D004135 4.7e-27 125.9 230 40.9
CiPaw.02G045300 Carya illinoinensis HOM05D001251 ORTHO05D004135 1.1e-26 124.8 339 34.8
Medtr7g118330 Medicago truncatula HOM05D001251 ORTHO05D004135 1.8e-26 124.0 301 37.5
Ca_09556_v3 Cicer arietinum L. HOM05D001251 ORTHO05D004135 2.3e-26 123.6 306 38.6
Glyma.16G017400 Glycine max HOM05D001251 ORTHO05D004135 3.1e-26 123.2 305 35.1
TAR629G3201 Trochodendron aralioides HOM05D001251 ORTHO05D004135 3.1e-26 123.2 287 35.5
Aa31LG1G10420 Aethionema arabicum HOM05D001251 ORTHO05D004135 4.0e-26 122.9 285 36.8
AUR62022683 Chenopodium quinoa HOM05D001251 ORTHO05D004135 4.0e-26 122.9 308 33.4
Phvul.010G120401 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 5.2e-26 122.5 267 36.7
Oeu064410.3 Olea europaea HOM05D001251 ORTHO05D004135 8.9e-26 121.7 290 36.6
Sopen10g001100 Solanum pennellii HOM05D001251 ORTHO05D004135 2.0e-25 120.6 307 36.5
Hma1.2p1_2492F.1_g323260 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 3.4e-25 119.8 294 36.4
Sabra02G0133600 Salix brachista HOM05D001251 ORTHO05D004135 3.4e-25 119.8 322 35.4
Nitab4.5_0005359g0030 Nicotiana tabacum HOM05D001251 ORTHO05D004135 4.4e-25 119.4 307 35.2
Solyc10g005080.3 Solanum lycopersicum HOM05D001251 ORTHO05D004135 5.8e-25 119.0 307 36.2
Aa31LG1G28200 Aethionema arabicum HOM05D001251 ORTHO05D004135 7.6e-25 118.6 253 38.7
THA.LOC104803067 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 7.6e-25 118.6 314 35.4
TWI14G1269 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 9.9e-25 118.2 322 33.2
THA.LOC104825910 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.3e-24 117.9 189 40.7
Phvul.009G259650 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 2.9e-24 116.7 298 36.2
Manes.05G015600 Manihot esculenta HOM05D001251 ORTHO05D004135 6.4e-24 115.5 304 32.9
Psat3g000720 Pisum sativum HOM05D001251 ORTHO05D004135 6.4e-24 115.5 302 35.1
PGR031G0915 Punica granatum HOM05D001251 ORTHO05D004135 8.4e-24 115.2 313 37.1
arahy.Tifrunner.gnm1.ann1.GF54Z4 Arachis hypogaea HOM05D001251 ORTHO05D004135 1.1e-23 114.8 303 33.7
Thhalv10007028m.g Eutrema salsugineum HOM05D001251 ORTHO05D004135 1.1e-23 114.8 273 34.8
Lalb_Chr15g0076591 Lupinus albus HOM05D001251 ORTHO05D004135 1.4e-23 114.4 296 36.1
arahy.Tifrunner.gnm1.ann1.P5534Y Arachis hypogaea HOM05D001251 ORTHO05D004135 1.9e-23 114.0 303 34.0
C03p00110 Brassica napus HOM05D001251 ORTHO05D004135 2.4e-23 113.6 254 38.2
Zm00001eb172450 Zea mays HOM05D001251 ORTHO05D004135 2.4e-23 113.6 267 37.5
FvH4_7g17850 Fragaria vesca HOM05D001251 ORTHO05D004135 3.2e-23 113.2 315 32.1
Oeu034954.1 Olea europaea HOM05D001251 ORTHO05D004135 3.2e-23 113.2 285 33.3
ATR0661G164 Amborella trichopoda HOM05D001251 ORTHO05D004135 4.1e-23 112.8 293 33.4
RcHm_v2.0_Chr1g0361301 Rosa chinensis HOM05D001251 ORTHO05D004135 4.1e-23 112.8 316 31.3
Os08g0157600 Oryza sativa ssp. japonica HOM05D001251 ORTHO05D004135 5.4e-23 112.5 294 37.8
Dinv32652 Davidia involucrata HOM05D001251 ORTHO05D004135 9.2e-23 111.7 253 38.7
FAN10G4260 Fragaria x ananassa HOM05D001251 ORTHO05D004135 9.2e-23 111.7 311 32.5
BraA08t35670Z Brassica rapa HOM05D001251 ORTHO05D004135 1.2e-22 111.3 254 37.4
FAN10G0258 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.2e-22 111.3 311 33.1
CsaV3_6G008360 Cucumis sativus L. HOM05D001251 ORTHO05D004135 1.6e-22 110.9 308 33.4
FAN06G1969 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.6e-22 110.9 315 32.7
FAN06G3608 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.6e-22 110.9 315 32.7
Lalb_Chr18g0044761 Lupinus albus HOM05D001251 ORTHO05D004135 1.6e-22 110.9 308 33.4
Sed0026128 Sechium edule HOM05D001251 ORTHO05D004135 1.6e-22 110.9 312 34.6
Sc26g0000440 Simmondsia chinensis HOM05D001251 ORTHO05D004135 1.6e-22 110.9 307 31.9
BcaB01g06139 Brassica carinata HOM05D001251 ORTHO05D004135 2.1e-22 110.5 255 37.3
A10p00850 Brassica napus HOM05D001251 ORTHO05D004135 2.1e-22 110.5 289 37.4
BolC3t12576H Brassica oleracea HOM05D001251 ORTHO05D004135 2.1e-22 110.5 255 37.3
Aqoxy7G00001_Aqoxy7G00002 Aquilegia oxysepala HOM05D001251 ORTHO05D004135 3.5e-22 109.8 280 32.5
EL10Ac1g00171 Beta vulgaris HOM05D001251 ORTHO05D004135 4.6e-22 109.4 310 32.3
ClCG06G002330 Citrullus lanatus HOM05D001251 ORTHO05D004135 6.0e-22 109.0 313 32.9
Peaxi162Scf00092g01519 Petunia axillaris HOM05D001251 ORTHO05D004135 6.0e-22 109.0 337 32.6
TWI23G1207 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 6.0e-22 109.0 324 31.2
FAN01G1785 Fragaria x ananassa HOM05D001251 ORTHO05D004135 7.8e-22 108.6 315 32.4
Phvul.009G259400 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 7.8e-22 108.6 298 34.6
Zm00001eb415760 Zea mays HOM05D001251 ORTHO05D004135 7.8e-22 108.6 181 42.5
AT1G01060 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 1.0e-21 108.2 284 35.9
FAN03G0514 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.0e-21 108.2 328 32.6
THA.LOC104827645 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.0e-21 108.2 307 34.9
vmacro12634 Vaccinium macrocarpon HOM05D001251 ORTHO05D004135 1.0e-21 108.2 310 33.5
Aqoxy7G03772 Aquilegia oxysepala HOM05D001251 ORTHO05D004135 1.7e-21 107.5 221 33.9
Carub.0001s0116 Capsella rubella HOM05D001251 ORTHO05D004135 1.7e-21 107.5 277 36.8
MELO3C022302.2 Cucumis melo HOM05D001251 ORTHO05D004135 1.7e-21 107.5 311 34.7
FAN01G0834 Fragaria x ananassa HOM05D001251 ORTHO05D004135 2.3e-21 107.1 315 32.4
BraA10t42363Z Brassica rapa HOM05D001251 ORTHO05D004135 3.0e-21 106.7 289 37.0
HanXRQChr09g0264411 Helianthus annuus HOM05D001251 ORTHO05D004135 3.9e-21 106.3 285 35.4
A08p37730 Brassica napus HOM05D001251 ORTHO05D004135 5.1e-21 105.9 241 36.9
DCAR_006991 Daucus carota HOM05D001251 ORTHO05D004135 5.1e-21 105.9 291 35.7
AL1G11460 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 6.6e-21 105.5 285 34.7
CAN.G1150.2 Capsicum annuum HOM05D001251 ORTHO05D004135 6.6e-21 105.5 309 31.1
Lalb_Chr10g0100921 Lupinus albus HOM05D001251 ORTHO05D004135 1.1e-20 104.8 311 33.8
MD01G1090900 Malus domestica HOM05D001251 ORTHO05D004135 1.1e-20 104.8 327 32.4
unitig_8.g3406 Utricularia gibba HOM05D001251 ORTHO05D004135 1.1e-20 104.8 283 33.6
BolC5t28872H Brassica oleracea HOM05D001251 ORTHO05D004135 1.9e-20 104.0 293 35.5
BcaC06g36496 Brassica carinata HOM05D001251 ORTHO05D004135 2.5e-20 103.6 214 37.4
CARHR142180 Cardamine hirsuta HOM05D001251 ORTHO05D004135 4.3e-20 102.8 287 37.6
BcaC06g36494 Brassica carinata HOM05D001251 ORTHO05D004135 5.6e-20 102.4 230 36.5
unitig_45.g31541 Utricularia gibba HOM05D001251 ORTHO05D004135 7.3e-20 102.1 295 33.9
BolC7t40758H Brassica oleracea HOM05D001251 ORTHO05D004135 9.6e-20 101.7 218 35.3
ECA240G1436 Erigeron canadensis HOM05D001251 ORTHO05D004135 9.6e-20 101.7 290 32.8
CARHR001420 Cardamine hirsuta HOM05D001251 ORTHO05D004135 1.2e-19 101.3 228 37.7
HanXRQChr09g0264401 Helianthus annuus HOM05D001251 ORTHO05D004135 1.2e-19 101.3 285 33.7
C05p00880 Brassica napus HOM05D001251 ORTHO05D004135 4.7e-19 99.4 294 35.0
BcaB03g13553 Brassica carinata HOM05D001071 ORTHO05D004135 6.2e-19 99.0 285 34.4
BolC4t21764H Brassica oleracea HOM05D001071 ORTHO05D004135 6.2e-19 99.0 233 38.6
unitig_8.g4997 Utricularia gibba HOM05D001251 ORTHO05D004135 6.2e-19 99.0 300 34.0
BraA05t19097Z Brassica rapa HOM05D001071 ORTHO05D004135 8.1e-19 98.6 289 34.9
Lj9C609G5 Lonicera japonica HOM05D001251 ORTHO05D004135 8.1e-19 98.6 312 32.7
A05p00970 Brassica napus HOM05D001071 ORTHO05D004135 1.1e-18 98.2 289 34.6
Sp1g01250 Schrenkiella parvula HOM05D001251 ORTHO05D004135 1.1e-18 98.2 278 35.3
unitig_22.g6823 Utricularia gibba HOM05D001251 ORTHO05D004135 1.1e-18 98.2 292 33.9
C04p01110 Brassica napus HOM05D001071 ORTHO05D004135 1.4e-18 97.8 234 39.3
Carub.0004s2954 Capsella rubella HOM05D001251 ORTHO05D004135 1.4e-18 97.8 292 32.9
HanXRQChr15g0489581 Helianthus annuus HOM05D001251 ORTHO05D004135 1.4e-18 97.8 272 34.6
PSO063G2933 Papaver somniferum HOM05D001251 ORTHO05D004135 1.4e-18 97.8 355 31.8
AL4G46300 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 1.8e-18 97.4 308 32.5
AT2G46830 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 8.9e-18 95.1 292 34.2
HPP92_002735 Vanilla planifolia HOM05D001251 ORTHO05D004135 8.9e-18 95.1 259 32.4
PSO782G0772 Papaver somniferum HOM05D001251 ORTHO05D004135 1.5e-17 94.4 349 28.9
BcaC07g37015 Brassica carinata HOM05D001251 ORTHO05D004135 4.4e-17 92.8 177 37.9
Sp4g28860 Schrenkiella parvula HOM05D001251 ORTHO05D004135 7.1e-15 85.5 294 32.3
Ah.05g178860 Amaranthus hybridus HOM05D001251 ORTHO05D004135 1.2e-14 84.7 316 27.5
Sed0027265 Sechium edule HOM05D001251 ORTHO05D004135 1.2e-14 84.7 313 29.7
Prupe.2G200300 Prunus persica HOM05D001251 ORTHO05D004135 3.5e-14 83.2 151 40.4
C08p00060 Brassica napus HOM05D001251 ORTHO05D004135 3.9e-13 79.7 141 39.7
unitig_578.g16510 Utricularia gibba HOM05D001251 ORTHO05D004135 4.3e-12 76.3 204 33.8
Lsat_1_v5_gn_3_140720 Lactuca sativa HOM05D001251 ORTHO05D004135 6.2e-11 72.4 230 33.0
THA.LOC104815900 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 6.9e-10 68.9 296 31.1
Nitab4.5_0007792g0010 Nicotiana tabacum HOM05D001251 ORTHO05D004135 1.7e-08 64.3 133 33.8
Hund27142 Selenicereus undatus HOM05D001251 ORTHO05D004135 2.9e-08 63.5 177 31.6
C07p03620 Brassica napus HOM05D001251 ORTHO05D004135 4.9e-08 62.8 213 28.6
BcaC02g12627 Brassica carinata HOM05D001071 ORTHO05D000932 6.4e-08 62.4 111 39.6
SEGI_18839 Sequoiadendron giganteum HOM05D001251 ORTHO05D004135 1.9e-07 60.8 65 47.7


User provided reference genes

Program Settings