Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0803 Ceratophyllum demersum HOM05D007983 ORTHO05D015772 8.8e-196 686.8 353 100.0
CDE05G0854 Ceratophyllum demersum HOM05D007983 ORTHO05D010117 3.3e-25 120.2 63 98.4
ClCG11G001530 Citrullus lanatus HOM05D000824 ORTHO05D002221 6.8e-15 85.9 70 68.6
Os07g0673600 Oryza sativa ssp. japonica HOM05D014837 ORTHO05D015772 4.9e-13 79.7 76 57.9
Nn8g38710 Nelumbo nucifera HOM05D014837 ORTHO05D015772 6.4e-13 79.3 113 49.6
Actinidia29344 Actinidia chinensis HOM05D007983 ORTHO05D010117 8.4e-13 79.0 55 65.5
Sabra06G0171900 Salix brachista HOM05D002533 ORTHO05D002855 8.4e-13 79.0 120 43.3
Cc08_g01250 Coffea canephora HOM05D007983 ORTHO05D010117 4.1e-12 76.6 56 60.7
GSVIVG01035456001 Vitis vinifera HOM05D007983 ORTHO05D010117 4.1e-12 76.6 56 62.5
FAN24G0660 Fragaria x ananassa HOM05D007983 ORTHO05D010117 7.1e-12 75.9 56 62.5
Gohir.D06G083500 Gossypium hirsutum HOM05D007983 ORTHO05D010117 7.1e-12 75.9 59 59.3
Gohir.A06G082600 Gossypium hirsutum HOM05D007983 ORTHO05D010117 1.2e-11 75.1 56 60.7
FvH4_2g31120 Fragaria vesca HOM05D007983 ORTHO05D010117 1.6e-11 74.7 56 60.7
FAN27G2148 Fragaria x ananassa HOM05D007983 ORTHO05D010117 1.6e-11 74.7 56 60.7
Manes.16G085100 Manihot esculenta HOM05D007983 ORTHO05D010117 1.6e-11 74.7 56 60.7
MBI13_g11355_MAGBIO Magnolia biondii HOM05D007983 ORTHO05D010117 2.1e-11 74.3 55 63.6
CDE05G0305 Ceratophyllum demersum HOM05D000001 ORTHO05D009739 3.5e-11 73.6 33 100.0
QL02p016696 Quercus lobata HOM05D007983 ORTHO05D010117 3.5e-11 73.6 56 58.9
Nn8g38701 Nelumbo nucifera HOM05D007983 ORTHO05D010117 6.0e-11 72.8 56 57.1
Aqoxy7G01072 Aquilegia oxysepala HOM05D007983 ORTHO05D010117 7.8e-11 72.4 56 58.9
Dinv02180 Davidia involucrata HOM05D007983 ORTHO05D010117 7.8e-11 72.4 55 65.5
Sed0022705 Sechium edule HOM05D007983 ORTHO05D010117 7.8e-11 72.4 59 54.2
TAR383G0105 Trochodendron aralioides HOM05D007983 ORTHO05D010117 7.8e-11 72.4 56 60.7
MD08G1070600 Malus domestica HOM05D007983 ORTHO05D010117 1.0e-10 72.0 56 57.1
Prupe.1G405500 Prunus persica HOM05D007983 ORTHO05D010117 1.0e-10 72.0 56 55.4
ClCG08G009810 Citrullus lanatus HOM05D007983 ORTHO05D010117 1.7e-10 71.2 58 55.2
ClCG08G009840 Citrullus lanatus HOM05D007983 ORTHO05D010117 1.7e-10 71.2 58 55.2
CsaV3_6G031940 Cucumis sativus L. HOM05D007983 ORTHO05D010117 1.7e-10 71.2 58 55.2
Ciclev10007465m.g Citrus clementina HOM05D007983 ORTHO05D010117 2.3e-10 70.9 56 53.6
RcHm_v2.0_Chr6g0311661 Rosa chinensis HOM05D007983 ORTHO05D010117 3.0e-10 70.5 56 57.1
MD15G1051500 Malus domestica HOM05D007983 ORTHO05D010117 3.9e-10 70.1 56 55.4
Nitab4.5_0008611g0010 Nicotiana tabacum HOM05D007983 ORTHO05D010117 6.6e-10 69.3 56 57.1
Peaxi162Scf00101g00166 Petunia axillaris HOM05D007983 ORTHO05D010117 8.7e-10 68.9 56 55.4
COL.COLO4_21129 Corchorus olitorius HOM05D007983 ORTHO05D010117 1.1e-09 68.6 60 53.3
Actinidia03543 Actinidia chinensis HOM05D014837 ORTHO05D015772 1.5e-09 68.2 128 42.2
EL10Ac2g03791 Beta vulgaris HOM05D007983 ORTHO05D010117 1.9e-09 67.8 55 54.5
Thecc.09G062200 Theobroma cacao HOM05D007983 ORTHO05D010117 1.9e-09 67.8 56 57.1
Atru.chr7.1856 Acer truncatum HOM05D007983 ORTHO05D010117 5.6e-09 66.2 56 50.0
HPP92_016198 Vanilla planifolia HOM05D014837 ORTHO05D015772 5.6e-09 66.2 59 59.3
CAN.G20.9 Capsicum annuum HOM05D007983 ORTHO05D010117 7.3e-09 65.9 56 55.4
PGSC0003DMG400021755 Solanum tuberosum HOM05D007983 ORTHO05D010117 7.3e-09 65.9 56 51.8
Oeu003976.2 Olea europaea HOM05D007983 ORTHO05D010117 1.6e-08 64.7 60 51.7
Lj7A227T29 Lonicera japonica HOM05D007983 ORTHO05D010117 2.1e-08 64.3 57 57.9
Lj7C225G3 Lonicera japonica HOM05D007983 ORTHO05D010117 2.8e-08 63.9 57 57.9
Hund19424 Selenicereus undatus HOM05D007983 ORTHO05D010117 2.8e-08 63.9 56 48.2
MELO3C011486.2 Cucumis melo HOM05D007983 ORTHO05D010117 4.7e-08 63.2 58 53.4
Cfa018016 Carpinus fangiana HOM05D007983 ORTHO05D010117 6.2e-08 62.8 56 51.8
Haze_18113 Corylus avellana HOM05D007983 ORTHO05D010117 6.2e-08 62.8 56 51.8
Ah.10g033950 Amaranthus hybridus HOM05D007983 ORTHO05D010117 8.1e-08 62.4 55 54.5
AUR62009087 Chenopodium quinoa HOM05D007983 ORTHO05D010117 8.1e-08 62.4 55 54.5
AUR62020583 Chenopodium quinoa HOM05D007983 ORTHO05D010117 8.1e-08 62.4 55 54.5
DCAR_004382 Daucus carota HOM05D007983 ORTHO05D010117 1.1e-07 62.0 56 51.8
Oeu022786.3 Olea europaea HOM05D007983 ORTHO05D010117 1.1e-07 62.0 57 52.6
MELO3C029343.2 Cucumis melo HOM05D014837 ORTHO05D015772 1.4e-07 61.6 117 43.6
SEGI_25530 Sequoiadendron giganteum HOM05D007983 ORTHO05D010117 1.8e-07 61.2 92 39.1
Nn5g28505 Nelumbo nucifera HOM05D000001 ORTHO05D009083 2.4e-07 60.8 81 35.8
Dinv09213 Davidia involucrata HOM05D000001 ORTHO05D010470 4.0e-07 60.1 78 37.2
ATR0598G010 Amborella trichopoda HOM05D007983 ORTHO05D010117 5.2e-07 59.7 56 51.8
HanXRQChr09g0261791 Helianthus annuus HOM05D007983 ORTHO05D010117 5.2e-07 59.7 59 54.2
Mapoly0094s0033 Marchantia polymorpha HOM05D002513 ORTHO05D002720 5.2e-07 59.7 56 51.8
Solyc08g061890.4 Solanum lycopersicum HOM05D007983 ORTHO05D010117 5.2e-07 59.7 56 44.6
Sopen08g017390 Solanum pennellii HOM05D007983 ORTHO05D010117 5.2e-07 59.7 56 44.6
Lj4g0007842 Lotus japonicus HOM05D000001 ORTHO05D010065 6.9e-07 59.3 81 40.7
CANSAT25G2345 Cannabis sativa HOM05D007983 ORTHO05D010117 9.0e-07 58.9 60 48.3
Cc06_g18610 Coffea canephora HOM05D000001 ORTHO05D000003 1.2e-06 58.5 105 35.2
Gohir.D12G077600 Gossypium hirsutum HOM05D000001 ORTHO05D009432 1.2e-06 58.5 144 25.7
Gorai.008G086300 Gossypium raimondii HOM05D000001 ORTHO05D009432 1.2e-06 58.5 144 25.7
Lsat_1_v5_gn_8_96760 Lactuca sativa HOM05D000001 ORTHO05D009485 1.2e-06 58.5 89 37.1
Gohir.D07G008465 Gossypium hirsutum HOM05D000001 ORTHO05D009485 1.5e-06 58.2 78 41.0
Gorai.001G008500 Gossypium raimondii HOM05D000001 ORTHO05D009485 1.5e-06 58.2 78 41.0
Prupe.2G326000 Prunus persica HOM05D000001 ORTHO05D009485 1.5e-06 58.2 78 39.7
Sed0007812 Sechium edule HOM05D000001 ORTHO05D009083 1.5e-06 58.2 78 34.6
HanXRQChr07g0189151 Helianthus annuus HOM05D000001 ORTHO05D011365 2.6e-06 57.4 78 37.2
Gohir.A12G080800 Gossypium hirsutum HOM05D000001 ORTHO05D009432 3.4e-06 57.0 146 26.7
Hma1.2p1_0012F.1_g007320 Hydrangea macrophylla HOM05D000001 ORTHO05D009485 3.4e-06 57.0 78 39.7
LjContig00357g0014935 Lotus japonicus HOM05D000001 ORTHO05D010669 3.4e-06 57.0 78 41.0
THA.LOC104806225 Tarenaya hassleriana HOM05D002041 ORTHO05D002364 3.4e-06 57.0 102 33.3
Phvul.002G249000 Phaseolus vulgaris HOM05D000001 ORTHO05D010669 4.4e-06 56.6 106 34.0
ClCG05G022130 Citrullus lanatus HOM05D000113 ORTHO05D001108 5.8e-06 56.2 78 38.5
Haze_25268 Corylus avellana HOM05D000001 ORTHO05D010983 5.8e-06 56.2 78 33.3
Haze_25270 Corylus avellana HOM05D000001 ORTHO05D010983 5.8e-06 56.2 78 33.3
Migut.F00183 Erythranthe guttata HOM05D000001 ORTHO05D010669 5.8e-06 56.2 78 37.2
MBI04_g38196_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.8e-06 56.2 110 35.5
Sed0027570 Sechium edule HOM05D000001 ORTHO05D009485 5.8e-06 56.2 78 39.7
TAR381G1613 Trochodendron aralioides HOM05D000001 ORTHO05D009083 5.8e-06 56.2 78 33.3
GSVIVG01000936001 Vitis vinifera HOM05D000001 ORTHO05D009083 5.8e-06 56.2 141 24.1
Migut.A00082 Erythranthe guttata HOM05D007983 ORTHO05D010117 7.6e-06 55.8 56 51.8
Migut.K00122 Erythranthe guttata HOM05D000001 ORTHO05D000003 7.6e-06 55.8 110 31.8
Manes.03G025700 Manihot esculenta HOM05D000001 ORTHO05D009485 7.6e-06 55.8 78 37.2
Medtr5g008600 Medicago truncatula HOM05D000001 ORTHO05D009545 7.6e-06 55.8 127 30.7
QL09p029648 Quercus lobata HOM05D000001 ORTHO05D009739 7.6e-06 55.8 78 39.7
QL12p007243 Quercus lobata HOM05D000001 ORTHO05D010065 7.6e-06 55.8 76 42.1
TWI63G1550 Tripterygium wilfordii HOM05D000001 ORTHO05D009485 7.6e-06 55.8 78 38.5
AagrBONN_evm.TU.Sc2ySwM_117.404 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-06 55.5 89 30.3
arahy.Tifrunner.gnm1.ann1.H5UZLL Arachis hypogaea HOM05D000001 ORTHO05D000003 9.9e-06 55.5 110 30.0
Eucgr.F03835 Eucalyptus grandis HOM05D000001 ORTHO05D000003 9.9e-06 55.5 116 31.0
FAN01G1991 Fragaria x ananassa HOM05D000001 ORTHO05D009485 9.9e-06 55.5 78 35.9
HanXRQChr05g0136011 Helianthus annuus HOM05D007983 ORTHO05D010117 9.9e-06 55.5 59 49.2
Pp3c1_38750 Physcomitrium patens HOM05D002513 ORTHO05D002720 9.9e-06 55.5 56 46.4
QL02p082493 Quercus lobata HOM05D000001 ORTHO05D000003 9.9e-06 55.5 82 37.8
QL05p083916 Quercus lobata HOM05D000001 ORTHO05D009485 9.9e-06 55.5 95 33.7
GSVIVG01026283001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.9e-06 55.5 109 31.2


User provided reference genes

Program Settings