Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0660 Ceratophyllum demersum HOM05D003395 ORTHO05D010236 5.8e-50 200.7 108 100.0
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 1.2e-23 113.2 65 89.2
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 1.2e-23 113.2 65 89.2
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 1.2e-23 113.2 65 89.2
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 1.0e-22 110.2 65 87.7
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.4e-22 109.8 65 86.2
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 2.3e-22 109.0 65 86.2
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 87.7
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 87.7
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 87.7
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 87.7
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 3.0e-22 108.6 65 86.2
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 3.9e-22 108.2 65 84.6
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 3.9e-22 108.2 65 84.6
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 3.9e-22 108.2 65 84.6
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 3.9e-22 108.2 65 84.6
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 3.9e-22 108.2 65 84.6
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 3.9e-22 108.2 65 84.6
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 5.1e-22 107.8 65 86.2
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 5.1e-22 107.8 65 86.2
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 5.1e-22 107.8 65 86.2
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 5.1e-22 107.8 65 86.2
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 5.1e-22 107.8 65 84.6
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 6.7e-22 107.5 65 84.6
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 6.7e-22 107.5 65 86.2
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 84.6
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 86.2
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 84.6
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 84.6
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 86.2
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 86.2
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 84.6
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 86.2
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 8.8e-22 107.1 65 84.6
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 84.6
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 1.1e-21 106.7 65 83.1
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 83.1
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 83.1
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 83.1
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 83.1
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 84.6
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 84.6
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.5e-21 106.3 65 83.1
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 2.0e-21 105.9 65 83.1
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 2.0e-21 105.9 65 81.5
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 2.0e-21 105.9 70 80.0
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 2.0e-21 105.9 70 80.0
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 2.0e-21 105.9 70 80.0
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 2.0e-21 105.9 70 80.0
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 2.6e-21 105.5 65 83.1
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 2.6e-21 105.5 65 83.1
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 2.6e-21 105.5 65 81.5
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 3.3e-21 105.1 65 83.1
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 3.3e-21 105.1 65 83.1
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 3.3e-21 105.1 65 83.1
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 4.4e-21 104.8 65 83.1
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 4.4e-21 104.8 65 83.1
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 4.4e-21 104.8 65 83.1
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 4.4e-21 104.8 65 83.1
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 4.4e-21 104.8 65 83.1
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 5.7e-21 104.4 65 84.6
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 5.7e-21 104.4 65 83.1
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.7e-21 104.4 65 83.1
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.7e-21 104.4 65 83.1
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.7e-21 104.4 65 83.1
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 7.4e-21 104.0 65 81.5
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 7.4e-21 104.0 65 81.5
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 1.3e-20 103.2 65 80.0
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.3e-20 103.2 65 81.5
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.3e-20 103.2 65 80.0
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 1.3e-20 103.2 65 84.6
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 1.7e-20 102.8 65 80.0
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.7e-20 102.8 65 81.5
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 2.2e-20 102.4 65 81.5
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 2.2e-20 102.4 65 80.0
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 2.2e-20 102.4 65 80.0
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 2.2e-20 102.4 65 84.6
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 2.8e-20 102.1 65 83.1
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 2.8e-20 102.1 65 83.1
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 2.8e-20 102.1 65 80.0
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 3.7e-20 101.7 65 80.0
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 3.7e-20 101.7 65 83.1
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 4.8e-20 101.3 65 78.5
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 4.8e-20 101.3 65 83.1
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 6.3e-20 100.9 65 81.5
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 6.3e-20 100.9 65 84.6
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 8.2e-20 100.5 65 81.5
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 1.8e-19 99.4 65 80.0
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 1.8e-19 99.4 65 80.0
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 1.8e-19 99.4 65 78.5
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 1.8e-19 99.4 65 80.0
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.8e-19 99.4 65 80.0
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 2.4e-19 99.0 65 80.0
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 3.1e-19 98.6 66 80.3
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 3.1e-19 98.6 85 67.1
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 3.1e-19 98.6 85 67.1
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 6.9e-19 97.4 65 78.5
Oeu023124.1 Olea europaea HOM05D004521 ORTHO05D010236 1.5e-18 96.3 65 76.9
SHI10457 Sapria himalayana HOM05D003395 ORTHO05D004087 1.5e-18 96.3 65 78.5
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 2.0e-18 95.9 65 75.4
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 2.9e-17 92.0 62 77.4
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 3.8e-17 91.7 65 70.8
SEGI_24724 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 3.8e-17 91.7 65 70.8
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 3.2e-16 88.6 62 71.0
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 4.2e-16 88.2 86 60.5
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 4.2e-16 88.2 86 60.5
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 2.7e-15 85.5 60 71.7
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.0e-15 84.0 103 51.5
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 1.4e-14 83.2 65 63.1
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 1.4e-11 73.2 62 58.1
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 1.8e-11 72.8 70 58.6
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 9.1e-11 70.5 65 63.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.0e-09 64.7 34 88.2


User provided reference genes

Program Settings