Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0872 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 6.5e-37 156.8 73 100.0
CDE10G1144 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 1.7e-29 132.1 63 100.0
CDE10G1147 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 1.7e-29 132.1 63 100.0
CAN.G631.46 Capsicum annuum HOM05D003916 ORTHO05D004655 7.7e-22 106.7 62 80.6
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 7.7e-22 106.7 63 77.8
DCAR_003218 Daucus carota HOM05D003916 ORTHO05D004655 1.0e-21 106.3 58 84.5
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 1.0e-21 106.3 60 81.7
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 1.3e-21 105.9 63 77.8
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 1.3e-21 105.9 61 80.3
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 1.7e-21 105.5 61 77.0
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 1.7e-21 105.5 63 77.8
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 1.7e-21 105.5 62 77.4
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 2.3e-21 105.1 63 76.2
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 2.9e-21 104.8 63 76.2
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 2.9e-21 104.8 63 79.4
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 2.9e-21 104.8 63 77.8
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 3.8e-21 104.4 63 76.2
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 3.8e-21 104.4 63 74.6
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 3.8e-21 104.4 63 77.8
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 5.0e-21 104.0 63 74.6
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 5.0e-21 104.0 61 78.7
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 5.0e-21 104.0 63 77.8
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 5.0e-21 104.0 63 77.8
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 5.0e-21 104.0 63 77.8
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 6.6e-21 103.6 63 76.2
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 6.6e-21 103.6 57 84.2
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 6.6e-21 103.6 63 77.8
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 8.6e-21 103.2 63 74.6
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 1.1e-20 102.8 57 82.5
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 1.1e-20 102.8 63 74.6
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 1.1e-20 102.8 57 82.5
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 1.5e-20 102.4 63 73.0
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 1.5e-20 102.4 63 73.0
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 1.5e-20 102.4 63 76.2
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 1.5e-20 102.4 63 73.0
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.9e-20 102.1 61 78.7
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 1.9e-20 102.1 63 71.4
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.5e-20 101.7 63 74.6
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 2.5e-20 101.7 60 80.0
Migut.E00937 Erythranthe guttata HOM05D003916 ORTHO05D004655 2.5e-20 101.7 60 80.0
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 2.5e-20 101.7 63 74.6
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 2.5e-20 101.7 63 73.0
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 2.5e-20 101.7 60 76.7
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 3.3e-20 101.3 60 78.3
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 3.3e-20 101.3 63 76.2
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 3.3e-20 101.3 63 73.0
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 4.2e-20 100.9 63 74.6
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 4.2e-20 100.9 57 80.7
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 4.2e-20 100.9 57 80.7
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 5.5e-20 100.5 63 73.0
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 5.5e-20 100.5 63 76.2
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 5.5e-20 100.5 63 76.2
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 5.5e-20 100.5 63 71.4
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 5.5e-20 100.5 63 74.6
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 7.2e-20 100.1 52 86.5
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 7.2e-20 100.1 63 73.0
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 7.2e-20 100.1 63 69.8
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 7.2e-20 100.1 63 73.0
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 9.5e-20 99.8 63 73.0
Dinv09344 Davidia involucrata HOM05D003916 ORTHO05D004655 9.5e-20 99.8 63 73.0
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 9.5e-20 99.8 57 80.7
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 9.5e-20 99.8 57 80.7
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 1.2e-19 99.4 63 69.8
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 1.2e-19 99.4 55 83.6
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 1.6e-19 99.0 55 83.6
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 1.6e-19 99.0 53 84.9
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.6e-19 99.0 61 75.4
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 1.6e-19 99.0 61 75.4
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.6e-19 99.0 56 82.1
PSO782G0643 Papaver somniferum HOM05D003916 ORTHO05D004655 1.6e-19 99.0 65 73.8
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 1.6e-19 99.0 57 78.9
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 2.1e-19 98.6 63 71.4
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 2.1e-19 98.6 52 86.5
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.1e-19 98.6 57 78.9
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 2.1e-19 98.6 63 71.4
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 2.8e-19 98.2 58 75.9
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 2.8e-19 98.2 63 73.0
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 2.8e-19 98.2 63 73.0
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 2.8e-19 98.2 57 78.9
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.8e-19 98.2 57 78.9
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.8e-19 98.2 57 78.9
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 3.6e-19 97.8 52 86.5
AagrBONN_evm.TU.Sc2ySwM_368.1572 Anthoceros agrestis HOM05D003916 ORTHO05D004655 3.6e-19 97.8 61 73.8
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 3.6e-19 97.8 52 86.5
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 4.7e-19 97.4 58 75.9
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 4.7e-19 97.4 58 75.9
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.7e-19 97.4 61 73.8
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 6.1e-19 97.1 52 84.6
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 6.1e-19 97.1 52 84.6
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 6.1e-19 97.1 58 75.9
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 6.1e-19 97.1 57 77.2
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 6.1e-19 97.1 63 71.4
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 6.1e-19 97.1 63 71.4
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 6.1e-19 97.1 63 71.4
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 6.1e-19 97.1 52 84.6
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 6.1e-19 97.1 52 84.6
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 8.0e-19 96.7 57 78.9
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 8.0e-19 96.7 57 77.2
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 1.0e-18 96.3 63 71.4
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 1.0e-18 96.3 57 75.4
PSO063G3578 Papaver somniferum HOM05D003916 ORTHO05D004655 1.0e-18 96.3 65 72.3
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 1.4e-18 95.9 52 82.7
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 1.4e-18 95.9 52 84.6
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 1.4e-18 95.9 52 84.6
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 1.4e-18 95.9 53 83.0
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 1.8e-18 95.5 58 75.9
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 1.8e-18 95.5 52 82.7
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 2.3e-18 95.1 63 69.8
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 2.3e-18 95.1 63 69.8
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 2.3e-18 95.1 63 69.8
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 2.3e-18 95.1 57 77.2
SEGI_19516 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 3.0e-18 94.7 62 71.0
Sc10g0000140 Simmondsia chinensis HOM05D003916 ORTHO05D004655 3.0e-18 94.7 62 71.0
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 4.0e-18 94.4 63 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1582 Anthoceros agrestis HOM05D003916 ORTHO05D004655 4.0e-18 94.4 61 70.5
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 4.0e-18 94.4 55 80.0
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 4.0e-18 94.4 58 74.1
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 5.2e-18 94.0 63 69.8
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 5.2e-18 94.0 57 73.7
MBI04_g44437_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 6.8e-18 93.6 57 73.7
SMO145G0130 Selaginella moellendorffii HOM05D003916 ORTHO05D004655 6.8e-18 93.6 62 66.1
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 6.8e-18 93.6 58 74.1
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 6.8e-18 93.6 58 74.1
Zm00001eb247250 Zea mays HOM05D003916 ORTHO05D004655 6.8e-18 93.6 58 74.1
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 8.9e-18 93.2 56 78.6
Mapoly0064s0055 Marchantia polymorpha HOM05D003916 ORTHO05D004655 1.2e-17 92.8 56 69.6
Sc11g0009080 Simmondsia chinensis HOM05D003916 ORTHO05D004655 1.2e-17 92.8 55 78.2
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 2.0e-17 92.0 52 80.8
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 2.6e-17 91.7 71 64.8
MELO3C023562.2 Cucumis melo HOM05D003916 ORTHO05D004655 4.4e-17 90.9 58 72.4
CsaV3_7G030940 Cucumis sativus L. HOM05D003916 ORTHO05D004655 5.7e-17 90.5 58 72.4
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 9.8e-17 89.7 58 70.7
Sed0017618 Sechium edule HOM05D003916 ORTHO05D004655 1.7e-16 89.0 58 69.0
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 3.7e-16 87.8 52 76.9
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 3.7e-16 87.8 52 76.9
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 3.7e-16 87.8 52 76.9
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 3.7e-16 87.8 52 76.9
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 3.7e-16 87.8 52 76.9
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 3.7e-16 87.8 52 76.9
Pp3c2_2740 Physcomitrium patens HOM05D003916 ORTHO05D004655 3.7e-16 87.8 61 65.6
Zm00001eb247220 Zea mays HOM05D003916 ORTHO05D004655 4.9e-16 87.4 58 70.7
Zm00001eb247270 Zea mays HOM05D003916 ORTHO05D004655 4.9e-16 87.4 52 76.9
Sabra09G0053700 Salix brachista HOM05D003916 ORTHO05D004655 6.3e-16 87.0 52 78.8
SEGI_28477 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 1.4e-15 85.9 52 75.0
Duzib133G0053 Durio zibethinus HOM05D003916 ORTHO05D004655 1.8e-15 85.5 52 75.0
ClCG09G004040 Citrullus lanatus HOM05D003916 ORTHO05D004655 7.0e-15 83.6 52 75.0
MBI06_g01064_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 7.0e-15 83.6 57 64.9
HPP92_009912 Vanilla planifolia HOM05D003916 ORTHO05D004655 2.7e-14 81.6 52 71.2
Zm00001eb247300 Zea mays HOM05D003916 ORTHO05D004655 4.6e-14 80.9 58 69.0
A03p48670 Brassica napus HOM05D003916 ORTHO05D004655 1.3e-13 79.3 54 66.7
BraA03t13970Z Brassica rapa HOM05D003916 ORTHO05D004655 1.3e-13 79.3 54 66.7
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 1.3e-13 79.3 82 51.2
Zm00001eb247280 Zea mays HOM05D003916 ORTHO05D004655 5.8e-09 63.9 58 56.9
PRCOL_00004893 Prasinoderma coloniale HOM05D003916 ORTHO05D004655 2.2e-08 62.0 57 45.6
Nitab4.5_0002959g0030 Nicotiana tabacum HOM05D003916 ORTHO05D004655 2.9e-08 61.6 36 80.6
Pp3c14_14340 Physcomitrium patens HOM05D003916 ORTHO05D004655 1.1e-07 59.7 53 56.6
SEGI_03740 Sequoiadendron giganteum HOM05D018713 ORTHO05D000093 7.8e-06 53.5 30 83.3


User provided reference genes

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