Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0550 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 3.2e-57 224.9 118 100.0
TAR633G2288 Trochodendron aralioides HOM05D005016 ORTHO05D005740 7.1e-25 117.5 104 58.7
PSO170G0092 Papaver somniferum HOM05D005016 ORTHO05D005740 2.7e-24 115.5 95 64.2
Nn4g24543 Nelumbo nucifera HOM05D005016 ORTHO05D005740 3.5e-24 115.2 100 61.0
HPP92_024286 Vanilla planifolia HOM05D005016 ORTHO05D005740 4.6e-24 114.8 103 63.1
PSO541G5136 Papaver somniferum HOM05D005016 ORTHO05D005740 1.0e-23 113.6 95 64.2
MBI16_g23767_MAGBIO Magnolia biondii HOM05D005016 ORTHO05D005740 1.3e-23 113.2 110 58.2
HPP92_024312 Vanilla planifolia HOM05D005016 ORTHO05D005740 6.6e-23 110.9 103 61.2
ATR0053G060 Amborella trichopoda HOM05D005016 ORTHO05D005740 1.1e-22 110.2 102 56.9
GSVIVG01031086001 Vitis vinifera HOM05D005016 ORTHO05D005740 3.3e-22 108.6 102 54.9
Zm00001eb056480 Zea mays HOM05D005016 ORTHO05D005740 4.3e-22 108.2 98 58.2
PSO675G5142 Papaver somniferum HOM05D005016 ORTHO05D005740 5.6e-22 107.8 105 57.1
Os03g0737600 Oryza sativa ssp. japonica HOM05D005016 ORTHO05D005740 3.6e-21 105.1 100 57.0
Prupe.6G323600 Prunus persica HOM05D005016 ORTHO05D005740 2.4e-20 102.4 106 50.9
RcHm_v2.0_Chr3g0455221 Rosa chinensis HOM05D005016 ORTHO05D005740 3.4e-19 98.6 102 51.0
arahy.Tifrunner.gnm1.ann1.16ZACY Arachis hypogaea HOM05D005016 ORTHO05D005740 4.5e-19 98.2 110 50.0
arahy.Tifrunner.gnm1.ann1.IT2BBU Arachis hypogaea HOM05D005016 ORTHO05D005740 4.5e-19 98.2 110 50.0
Sed0001919 Sechium edule HOM05D005016 ORTHO05D005740 4.5e-19 98.2 102 50.0
MD12G1217300 Malus domestica HOM05D005016 ORTHO05D005740 5.8e-19 97.8 100 53.0
Medtr1g083060 Medicago truncatula HOM05D005016 ORTHO05D005740 5.8e-19 97.8 95 51.6
Manes.09G168600 Manihot esculenta HOM05D005016 ORTHO05D005740 7.6e-19 97.4 100 56.0
Actinidia03321 Actinidia chinensis HOM05D005016 ORTHO05D005740 1.3e-18 96.7 92 55.4
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.3e-18 96.7 93 50.5
ClCG01G016560 Citrullus lanatus HOM05D005016 ORTHO05D005740 1.7e-18 96.3 95 50.5
Ciclev10001764m.g Citrus clementina HOM05D005016 ORTHO05D005740 1.7e-18 96.3 93 52.7
CSS0032285 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 2.2e-18 95.9 97 51.5
TPR.G6101 Trifolium pratense HOM05D005016 ORTHO05D005740 2.2e-18 95.9 95 50.5
Phvul.007G179300 Phaseolus vulgaris HOM05D005016 ORTHO05D005740 2.9e-18 95.5 102 51.0
HanXRQChr12g0365431 Helianthus annuus HOM05D005016 ORTHO05D005740 4.9e-18 94.7 88 54.5
Glyma.06G164600 Glycine max HOM05D005016 ORTHO05D005740 6.4e-18 94.4 95 51.6
Prupe.2G191000 Prunus persica HOM05D005016 ORTHO05D005740 6.4e-18 94.4 108 48.1
Eucgr.B01853 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.1e-17 93.6 97 49.5
Eucgr.B01941 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.1e-17 93.6 97 49.5
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.1e-17 93.6 93 48.4
CiPaw.07G019300 Carya illinoinensis HOM05D005016 ORTHO05D005740 2.4e-17 92.4 102 46.1
Sc09g0003080 Simmondsia chinensis HOM05D005016 ORTHO05D005740 4.2e-17 91.7 97 50.5
Dinv09444 Davidia involucrata HOM05D005016 ORTHO05D005740 5.4e-17 91.3 93 49.5
Peaxi162Scf00235g00215 Petunia axillaris HOM05D005016 ORTHO05D005740 5.4e-17 91.3 93 48.4
Duzib177G0724 Durio zibethinus HOM05D005016 ORTHO05D005740 7.1e-17 90.9 95 51.6
ECA236G0643 Erigeron canadensis HOM05D005016 ORTHO05D005740 7.1e-17 90.9 88 52.3
SGA_v2.0_scaffold73G24502 Striga asiatica HOM05D005016 ORTHO05D005740 9.3e-17 90.5 91 48.4
MSTRG.6641 Avicennia marina HOM05D005016 ORTHO05D005740 1.2e-16 90.1 93 51.6
Thecc.05G310100 Theobroma cacao HOM05D005016 ORTHO05D005740 1.6e-16 89.7 95 52.6
Migut.M00036 Erythranthe guttata HOM05D005016 ORTHO05D005740 2.1e-16 89.4 92 51.1
Psat0s2745g0240 Pisum sativum HOM05D005016 ORTHO05D005740 2.1e-16 89.4 103 45.6
THA.LOC104818706 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 2.1e-16 89.4 97 47.4
C02p58190 Brassica napus HOM05D001965 ORTHO05D005740 2.7e-16 89.0 98 50.0
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 2.7e-16 89.0 98 50.0
BcaC03g17793 Brassica carinata HOM05D001965 ORTHO05D005740 3.5e-16 88.6 98 50.0
Cc02_g33260 Coffea canephora HOM05D005016 ORTHO05D005740 4.6e-16 88.2 92 50.0
DCAR_002182 Daucus carota HOM05D005016 ORTHO05D005740 4.6e-16 88.2 88 52.3
A02p38680 Brassica napus HOM05D001965 ORTHO05D005740 6.0e-16 87.8 98 50.0
BraA02t08844Z Brassica rapa HOM05D001965 ORTHO05D005740 6.0e-16 87.8 98 50.0
CANSAT54G1439 Cannabis sativa HOM05D005016 ORTHO05D005740 6.0e-16 87.8 98 48.0
Lalb_Chr02g0155631 Lupinus albus HOM05D005016 ORTHO05D005740 6.0e-16 87.8 95 48.4
FvH4_6g06200 Fragaria vesca HOM05D005016 ORTHO05D005740 7.9e-16 87.4 108 48.1
FAN05G1032 Fragaria x ananassa HOM05D005016 ORTHO05D005740 7.9e-16 87.4 120 45.0
FAN14G2756 Fragaria x ananassa HOM05D005016 ORTHO05D005740 7.9e-16 87.4 108 48.1
QL03p007589 Quercus lobata HOM05D005016 ORTHO05D005740 7.9e-16 87.4 86 51.2
QL03p007603 Quercus lobata HOM05D005016 ORTHO05D005740 7.9e-16 87.4 86 51.2
QL03p012886 Quercus lobata HOM05D005016 ORTHO05D005740 7.9e-16 87.4 86 51.2
Gohir.D11G276400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.0e-15 87.0 98 53.1
Gorai.007G298500 Gossypium raimondii HOM05D005016 ORTHO05D005740 1.0e-15 87.0 105 50.5
Hma1.2p1_0268F.1_g107630 Hydrangea macrophylla HOM05D005016 ORTHO05D005740 1.0e-15 87.0 91 50.5
VMungo0720G0219 Vigna mungo HOM05D005016 ORTHO05D005740 1.0e-15 87.0 87 51.7
Gohir.A11G266100 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.3e-15 86.7 98 53.1
CiPaw.08G163500 Carya illinoinensis HOM05D005016 ORTHO05D005740 2.3e-15 85.9 85 50.6
MELO3C007526.2 Cucumis melo HOM05D005016 ORTHO05D005740 2.3e-15 85.9 100 47.0
CsaV3_6G042870 Cucumis sativus L. HOM05D005016 ORTHO05D005740 2.3e-15 85.9 100 47.0
Lsat_1_v5_gn_8_67801 Lactuca sativa HOM05D005016 ORTHO05D005740 3.0e-15 85.5 79 53.2
FAN09G3795 Fragaria x ananassa HOM05D005016 ORTHO05D005740 3.9e-15 85.1 90 51.1
Solyc04g072880.3 Solanum lycopersicum HOM05D005016 ORTHO05D005740 3.9e-15 85.1 93 45.2
unitig_899.g15345 Utricularia gibba HOM05D005016 ORTHO05D005740 3.9e-15 85.1 98 46.9
Nitab4.5_0002144g0050 Nicotiana tabacum HOM05D005016 ORTHO05D005740 5.1e-15 84.7 103 47.6
PGR102G1806 Punica granatum HOM05D005016 ORTHO05D005740 5.1e-15 84.7 97 47.4
THA.LOC104821717 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 5.1e-15 84.7 94 47.9
Lj5g0018596 Lotus japonicus HOM05D005016 ORTHO05D005740 6.7e-15 84.3 87 47.1
Nitab4.5_0003830g0020 Nicotiana tabacum HOM05D005016 ORTHO05D005740 6.7e-15 84.3 103 47.6
Haze_04172 Corylus avellana HOM05D005016 ORTHO05D005740 8.7e-15 84.0 85 49.4
Rhsim05G0222800 Rhododendron simsii HOM05D005016 ORTHO05D005740 1.1e-14 83.6 93 48.4
Sopen04g029030 Solanum pennellii HOM05D005016 ORTHO05D005740 1.5e-14 83.2 93 44.1
vmacro04578 Vaccinium macrocarpon HOM05D005016 ORTHO05D005740 1.5e-14 83.2 93 49.5
A06p37400 Brassica napus HOM05D001965 ORTHO05D002112 1.9e-14 82.8 103 47.6
BraA06t26664Z Brassica rapa HOM05D001965 ORTHO05D002112 1.9e-14 82.8 103 47.6
Cpa.g.sc28.137 Carica papaya HOM05D005016 ORTHO05D005740 1.9e-14 82.8 95 47.4
COL.COLO4_10485 Corchorus olitorius HOM05D005016 ORTHO05D005740 1.9e-14 82.8 96 46.9
MD04G1203400 Malus domestica HOM05D005016 ORTHO05D005740 1.9e-14 82.8 81 51.9
AUR62005165 Chenopodium quinoa HOM05D005016 ORTHO05D005740 2.5e-14 82.4 105 44.8
AUR62000803 Chenopodium quinoa HOM05D005016 ORTHO05D005740 4.3e-14 81.6 100 46.0
SMO367G1055 Selaginella moellendorffii HOM05D005016 ORTHO05D005740 7.4e-14 80.9 98 44.9
PGSC0003DMG400009473 Solanum tuberosum HOM05D005016 ORTHO05D005740 7.4e-14 80.9 93 44.1
Ah.04g160380 Amaranthus hybridus HOM05D005016 ORTHO05D005740 9.6e-14 80.5 100 44.0
SalBow7G0803 Salvia bowleyana HOM05D005016 ORTHO05D005740 9.6e-14 80.5 79 50.6
TWI18G0619 Tripterygium wilfordii HOM05D005016 ORTHO05D005740 1.3e-13 80.1 100 45.0
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 1.6e-13 79.7 84 50.0
Thhalv10004554m.g Eutrema salsugineum HOM05D005016 ORTHO05D005740 1.6e-13 79.7 98 45.9
EL10Ac4g09400 Beta vulgaris HOM05D005016 ORTHO05D005740 2.8e-13 79.0 93 48.4
A09p05360 Brassica napus HOM05D005016 ORTHO05D005740 6.2e-13 77.8 85 50.6
Eucgr.H02201 Eucalyptus grandis HOM05D005016 ORTHO05D005740 6.2e-13 77.8 78 46.2
Oeu012104.3 Olea europaea HOM05D005016 ORTHO05D005740 6.2e-13 77.8 98 42.9
AL6G39410 Arabidopsis lyrata HOM05D005016 ORTHO05D005740 8.1e-13 77.4 85 52.9
Hund07082 Selenicereus undatus HOM05D005016 ORTHO05D005740 1.1e-12 77.0 100 45.0
AT5G27620 Arabidopsis thaliana HOM05D005016 ORTHO05D005740 1.8e-12 76.3 85 51.8
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 2.4e-12 75.9 97 45.4
BolC7t44626H Brassica oleracea HOM05D005016 ORTHO05D005740 2.4e-12 75.9 97 45.4
HanXRQChr16g0532711 Helianthus annuus HOM05D005016 ORTHO05D005740 2.4e-12 75.9 94 44.7
Sopen01g042860 Solanum pennellii HOM05D005016 ORTHO05D005740 2.4e-12 75.9 95 47.4
BcaB04g19682 Brassica carinata HOM05D005016 ORTHO05D005740 3.1e-12 75.5 85 50.6
C09p05840 Brassica napus HOM05D005016 ORTHO05D005740 3.1e-12 75.5 85 50.6
BolC9t53511H Brassica oleracea HOM05D005016 ORTHO05D005740 3.1e-12 75.5 85 50.6
BraA09t36174Z Brassica rapa HOM05D005016 ORTHO05D005740 3.1e-12 75.5 85 50.6
Solyc01g099310.4 Solanum lycopersicum HOM05D005016 ORTHO05D005740 4.0e-12 75.1 95 46.3
CARHR186150 Cardamine hirsuta HOM05D005016 ORTHO05D005740 6.9e-12 74.3 97 43.3
Sabra05G0033200 Salix brachista HOM05D005016 ORTHO05D005740 9.0e-12 73.9 84 45.2
Sp2g20780 Schrenkiella parvula HOM05D005016 ORTHO05D005740 9.0e-12 73.9 85 48.2
CAN.G1034.54 Capsicum annuum HOM05D005016 ORTHO05D005740 1.2e-11 73.6 93 43.0
Potri.005G027700 Populus trichocarpa HOM05D005016 ORTHO05D005740 3.4e-11 72.0 111 40.5
Carub.0006s2497 Capsella rubella HOM05D005016 ORTHO05D005740 5.8e-11 71.2 85 48.2
Ca_21251_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 2.4e-09 65.9 71 43.7
Pp3c5_10610 Physcomitrium patens HOM05D005016 ORTHO05D005740 2.4e-09 65.9 89 49.4
Ca_10118_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 3.2e-09 65.5 79 43.0
Mapoly0001s0195 Marchantia polymorpha HOM05D005016 ORTHO05D005740 1.2e-08 63.5 99 39.4
Mapoly0138s0006 Marchantia polymorpha HOM05D005016 ORTHO05D005740 1.6e-08 63.2 98 41.8
PGSC0003DMG400024698 Solanum tuberosum HOM05D005016 ORTHO05D005740 5.1e-07 58.2 93 39.8


User provided reference genes

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