Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 6.0e-135 484.2 246 100.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.7e-93 344.7 177 96.6
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.9e-80 303.1 184 77.2
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 3.2e-80 302.4 184 76.6
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 5.5e-80 301.6 184 76.1
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 7.2e-80 301.2 184 76.1
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 9.4e-80 300.8 178 79.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.2e-79 300.4 178 79.2
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 2.7e-79 299.3 184 77.2
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 3.6e-79 298.9 184 75.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 3.6e-79 298.9 184 75.5
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 4.7e-79 298.5 184 75.5
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 4.7e-79 298.5 184 75.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 4.7e-79 298.5 184 75.5
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 8.0e-79 297.7 184 77.7
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 8.0e-79 297.7 184 75.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.0e-79 297.7 184 76.6
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.0e-78 297.4 184 75.5
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.4e-78 297.0 184 76.6
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.8e-78 296.6 184 74.5
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 3.0e-78 295.8 184 77.7
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.0e-78 295.4 184 73.9
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.0e-78 295.4 184 77.7
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.2e-78 295.0 184 73.9
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.8e-78 294.7 184 73.9
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 8.8e-78 294.3 184 75.0
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.2e-77 293.9 184 75.5
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.5e-77 293.5 184 76.6
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 2.0e-77 293.1 184 76.6
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.0e-77 293.1 184 76.6
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.0e-77 293.1 184 77.2
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.4e-77 292.0 180 74.4
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 5.7e-77 291.6 177 75.7
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 7.5e-77 291.2 184 77.7
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.3e-76 290.4 179 76.5
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.7e-76 290.0 184 75.0
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.7e-76 290.0 184 75.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.7e-76 288.9 184 74.5
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 4.8e-76 288.5 179 73.7
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.8e-76 288.5 182 76.9
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.4e-75 287.0 184 73.4
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.4e-75 287.0 181 74.6
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-75 286.6 184 73.4
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-75 286.6 184 73.4
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.8e-75 286.6 184 74.5
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.8e-75 286.6 184 72.8
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.8e-75 286.6 183 73.2
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.4e-75 286.2 184 73.4
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.4e-75 286.2 179 75.4
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.1e-75 285.4 184 73.4
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.1e-75 285.4 184 73.4
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 4.1e-75 285.4 179 76.0
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 9.1e-75 284.3 184 72.8
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 9.1e-75 284.3 179 75.4
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 2.7e-74 282.7 179 74.3
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.5e-74 282.3 180 75.6
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 4.5e-74 282.0 184 71.7
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 7.7e-74 281.2 176 73.9
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 7.7e-74 281.2 184 74.5
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 2.2e-73 279.6 178 74.7
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.2e-73 279.6 176 73.9
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.9e-73 279.3 179 72.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.9e-73 279.3 179 72.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.8e-73 278.9 179 72.1
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 5.0e-73 278.5 184 71.2
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 5.0e-73 278.5 184 72.3
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 6.5e-73 278.1 179 73.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.5e-73 278.1 184 71.7
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.9e-72 276.6 179 72.6
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.5e-72 276.2 179 73.2
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.5e-72 276.2 177 71.8
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.5e-72 275.0 179 72.6
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 7.2e-72 274.6 179 72.6
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 9.4e-72 274.2 179 73.2
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 9.4e-72 274.2 179 72.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.2e-71 273.9 178 72.5
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.2e-71 273.9 182 70.9
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.1e-71 273.1 179 72.1
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.7e-71 272.7 179 72.1
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 4.7e-71 271.9 179 72.1
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.1e-71 271.6 179 71.5
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 8.0e-71 271.2 179 69.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.4e-70 270.4 184 69.0
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.8e-70 270.0 179 70.9
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.3e-70 269.6 179 71.5
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.3e-70 269.6 179 72.1
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.0e-70 269.2 181 70.7
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.8e-70 268.1 184 66.8
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.8e-70 268.1 184 68.5
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 8.8e-70 267.7 179 71.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.2e-69 267.3 180 71.1
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.5e-69 266.9 184 66.8
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.5e-69 266.9 179 70.4
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-69 266.5 184 68.5
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.6e-69 266.2 184 66.8
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 7.5e-69 264.6 179 65.9
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.8e-69 264.2 206 63.1
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.7e-68 263.5 179 69.3
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.7e-68 263.5 179 69.3
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.7e-68 263.5 179 69.3
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 2.2e-68 263.1 179 70.9
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.2e-68 263.1 184 66.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.8e-68 262.7 182 67.6
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 6.3e-68 261.5 179 68.2
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.1e-67 260.8 178 68.0
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.4e-67 260.4 182 68.1
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.8e-67 260.0 185 66.5
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 2.4e-67 259.6 178 68.0
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.1e-67 259.2 185 65.4
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 4.1e-67 258.8 170 74.7
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 7.0e-67 258.1 180 68.9
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 9.2e-67 257.7 179 67.6
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 9.2e-67 257.7 179 67.6
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.5e-66 255.8 176 65.9
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.5e-66 255.8 185 65.4
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 4.5e-66 255.4 187 66.8
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 4.5e-66 255.4 185 65.4
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.0e-65 254.2 184 65.2
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.0e-65 254.2 184 67.4
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 2.9e-65 252.7 188 66.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 8.6e-65 251.1 182 65.9
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.5e-64 250.4 181 65.2
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 9.5e-64 247.7 178 67.4
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 8.9e-62 241.1 194 60.8
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 3.4e-61 239.2 179 64.2
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 5.7e-61 238.4 181 63.0
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.1e-59 234.2 178 64.0
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.8e-59 233.4 184 61.4
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.6e-57 224.9 179 60.9
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 5.6e-56 221.9 176 63.1
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 4.9e-52 208.8 179 59.8
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.1e-51 207.6 179 55.9
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.2e-50 204.1 165 61.8
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 3.9e-49 199.1 199 53.3
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.3e-46 189.9 195 52.3
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.0e-45 186.8 116 70.7
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.9e-43 180.3 121 69.4
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 8.6e-41 171.4 179 44.1
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 9.5e-40 167.9 157 54.8
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.7e-25 120.6 76 75.0
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.9e-24 117.1 99 57.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.1e-23 113.6 109 54.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 4.0e-14 82.8 50 74.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 1.3e-12 77.8 59 59.3
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.2e-12 77.0 55 61.8
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 8.7e-09 65.1 38 76.3


User provided reference genes

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