Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 5.2e-99 364.4 183 100.0
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.5e-95 351.7 183 97.3
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.7e-94 349.4 183 94.0
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 6.1e-92 340.9 183 90.2
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 6.1e-92 340.9 183 90.7
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 6.1e-92 340.9 183 90.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 8.0e-92 340.5 182 91.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.8e-91 339.3 183 88.5
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 88.5
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 88.5
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 5.2e-91 337.8 183 88.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.2e-90 336.7 183 88.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.0e-90 335.9 183 88.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 89.6
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 88.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 7.5e-90 334.0 183 88.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 7.5e-90 334.0 183 88.0
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 89.1
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 86.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 89.6
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 6.3e-89 330.9 183 87.4
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 86.9
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.4e-88 328.9 181 86.7
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 88.5
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 86.3
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 88.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 84.7
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 86.9
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 85.8
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 85.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 85.8
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.6e-87 326.2 182 86.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 85.2
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 85.2
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 85.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 85.8
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 85.8
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 3.5e-87 325.1 182 86.3
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 85.8
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 85.8
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 84.7
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 85.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 85.2
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 85.2
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 84.2
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 86.3
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.7e-86 322.8 183 85.8
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 84.2
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.8e-86 321.6 190 83.2
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.8e-86 321.6 181 85.1
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.0e-86 321.2 181 84.0
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.7
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.1
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.1
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.1
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.9e-85 319.3 181 84.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.2
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 83.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-85 318.9 181 84.0
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 82.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 2.5e-85 318.9 182 83.5
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 3.3e-85 318.5 181 83.4
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 83.6
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 83.6
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.5
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 4.2e-85 318.2 181 85.1
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 5.5e-85 317.8 181 83.4
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 83.1
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 82.0
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 83.1
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 82.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 83.4
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 84.0
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 84.0
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.6e-84 315.1 181 82.9
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 83.1
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.7e-84 314.7 181 82.9
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 4.7e-84 314.7 181 84.5
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.0e-83 313.5 182 83.0
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-83 313.2 181 83.4
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.4e-83 313.2 181 83.4
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.4e-83 313.2 181 83.4
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 83.6
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 82.5
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.0
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 81.4
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 82.3
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 4.4e-82 308.1 181 82.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 4.4e-82 308.1 181 82.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 82.0
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.3
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 81.8
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 82.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 81.4
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 81.4
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-79 300.1 184 77.2
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.6e-79 299.7 184 79.3
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 7.8e-79 297.4 184 76.6
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 3.8e-78 295.0 183 78.1
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 78.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.5e-77 293.1 182 79.1
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.9e-77 292.7 228 65.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 75.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 76.1
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.8e-76 288.9 183 76.0
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 4.7e-76 288.1 183 74.3
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 72.7
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 4.4e-74 281.6 182 74.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 9.8e-74 280.4 183 71.0
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.7e-73 279.6 155 84.5
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 5.4e-72 274.6 183 75.4
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 7.0e-72 274.2 219 65.8
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 7.0e-72 274.2 185 71.4
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-71 273.5 155 84.5
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 2.0e-71 272.7 184 69.6
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.7e-71 272.3 152 83.6
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.0e-70 270.4 183 74.9
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.1e-67 260.4 152 82.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 8.9e-67 257.3 181 68.5
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.3e-65 253.4 181 71.3
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.7e-63 245.7 188 69.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 4.6e-63 245.0 181 66.9
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 2.3e-62 242.7 138 82.6
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 3.4e-58 228.8 183 63.9
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.7e-57 226.5 183 65.6
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.1e-56 223.8 138 76.8
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.1e-56 223.8 155 73.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.7e-55 219.2 179 65.4
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.7e-54 216.5 185 61.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-52 209.9 158 63.9
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 9.9e-50 200.7 152 63.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.4e-49 198.0 149 66.4
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.2e-47 193.7 102 91.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 6.0e-47 191.4 186 52.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.5e-45 186.0 102 85.3
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 7.3e-45 184.5 158 58.9
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.1e-44 183.0 106 81.1
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.1e-44 181.0 99 85.9
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.1e-43 180.6 100 85.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.8e-43 179.9 100 86.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 6.9e-43 177.9 146 60.3
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.7e-39 166.0 134 62.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.8e-36 155.2 99 72.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 5.8e-34 148.3 105 65.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 8.4e-33 144.4 81 85.2
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 8.7e-30 134.4 81 79.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 9.6e-29 131.0 78 78.2
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 3.4e-26 122.5 106 59.4
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.3e-25 120.6 101 59.4
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.1e-21 107.5 106 58.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.8e-19 100.1 68 64.7
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.3e-19 98.6 52 92.3
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.0e-18 96.7 187 39.0
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.0e-09 67.8 181 32.0
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 5.0e-09 65.5 81 46.9
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 2.1e-07 60.1 37 73.0


User provided reference genes

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