Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0345 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 1.8e-66 255.8 126 100.0
CDE10G0931 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 1.5e-41 172.9 198 51.0
Rhsim05G0222800 Rhododendron simsii HOM05D005016 ORTHO05D005740 3.0e-29 132.1 160 46.9
Nn4g24543 Nelumbo nucifera HOM05D005016 ORTHO05D005740 1.6e-27 126.3 211 37.9
TAR633G2288 Trochodendron aralioides HOM05D005016 ORTHO05D005740 2.1e-27 125.9 211 37.9
FAN09G3795 Fragaria x ananassa HOM05D005016 ORTHO05D005740 2.4e-26 122.5 144 47.9
MBI16_g23767_MAGBIO Magnolia biondii HOM05D005016 ORTHO05D005740 2.4e-26 122.5 242 34.3
Haze_04172 Corylus avellana HOM05D005016 ORTHO05D005740 6.8e-26 120.9 193 39.4
PSO541G5136 Papaver somniferum HOM05D005016 ORTHO05D005740 6.8e-26 120.9 211 37.9
PSO170G0092 Papaver somniferum HOM05D005016 ORTHO05D005740 8.9e-26 120.6 210 37.6
ATR0053G060 Amborella trichopoda HOM05D005016 ORTHO05D005740 1.5e-25 119.8 209 36.8
Cpa.g.sc28.137 Carica papaya HOM05D005016 ORTHO05D005740 1.5e-25 119.8 195 38.5
Actinidia03321 Actinidia chinensis HOM05D005016 ORTHO05D005740 2.0e-25 119.4 211 37.9
PSO675G5142 Papaver somniferum HOM05D005016 ORTHO05D005740 5.8e-25 117.9 211 37.4
QL03p007589 Quercus lobata HOM05D005016 ORTHO05D005740 7.6e-25 117.5 207 36.2
QL03p012886 Quercus lobata HOM05D005016 ORTHO05D005740 7.6e-25 117.5 207 36.2
GSVIVG01031086001 Vitis vinifera HOM05D005016 ORTHO05D005740 1.3e-24 116.7 211 36.0
QL03p007603 Quercus lobata HOM05D005016 ORTHO05D005740 1.7e-24 116.3 210 35.7
Prupe.6G323600 Prunus persica HOM05D005016 ORTHO05D005740 1.1e-23 113.6 210 35.7
CSS0007157 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 2.4e-23 112.5 210 34.8
Ciclev10001764m.g Citrus clementina HOM05D005016 ORTHO05D005740 3.2e-23 112.1 216 34.7
Gohir.D11G276400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.2e-23 112.1 210 36.2
Gohir.A11G266100 Gossypium hirsutum HOM05D005016 ORTHO05D005740 4.2e-23 111.7 210 36.2
Gorai.007G298500 Gossypium raimondii HOM05D005016 ORTHO05D005740 4.2e-23 111.7 210 36.2
Hma1.2p1_0268F.1_g107630 Hydrangea macrophylla HOM05D005016 ORTHO05D005740 4.2e-23 111.7 211 36.0
Thecc.05G310100 Theobroma cacao HOM05D005016 ORTHO05D005740 5.4e-23 111.3 211 37.0
Lj5g0018596 Lotus japonicus HOM05D005016 ORTHO05D005740 7.1e-23 110.9 209 34.9
COL.COLO4_10485 Corchorus olitorius HOM05D005016 ORTHO05D005740 1.2e-22 110.2 211 34.6
CiPaw.07G019300 Carya illinoinensis HOM05D005016 ORTHO05D005740 1.6e-22 109.8 210 34.8
Dinv09444 Davidia involucrata HOM05D005016 ORTHO05D005740 1.6e-22 109.8 211 35.5
Sabra05G0033200 Salix brachista HOM05D005016 ORTHO05D005740 1.6e-22 109.8 183 39.3
VMungo0720G0219 Vigna mungo HOM05D005016 ORTHO05D005740 2.7e-22 109.0 210 35.7
CiPaw.08G163500 Carya illinoinensis HOM05D005016 ORTHO05D005740 3.5e-22 108.6 210 35.2
Ca_21251_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 4.6e-22 108.2 194 36.6
Medtr1g083060 Medicago truncatula HOM05D005016 ORTHO05D005740 4.6e-22 108.2 210 35.7
Eucgr.B01853 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.3e-21 106.7 207 35.7
Glyma.06G164600 Glycine max HOM05D005016 ORTHO05D005740 1.3e-21 106.7 217 34.6
MD12G1217300 Malus domestica HOM05D005016 ORTHO05D005740 1.3e-21 106.7 207 35.7
Sed0001919 Sechium edule HOM05D005016 ORTHO05D005740 1.3e-21 106.7 207 34.8
Lalb_Chr02g0155631 Lupinus albus HOM05D005016 ORTHO05D005740 1.7e-21 106.3 209 34.9
Nitab4.5_0003830g0020 Nicotiana tabacum HOM05D005016 ORTHO05D005740 1.7e-21 106.3 209 34.9
HPP92_024286 Vanilla planifolia HOM05D005016 ORTHO05D005740 1.7e-21 106.3 211 35.1
CsaV3_6G042870 Cucumis sativus L. HOM05D005016 ORTHO05D005740 2.3e-21 105.9 205 35.1
Eucgr.B01941 Eucalyptus grandis HOM05D005016 ORTHO05D005740 2.3e-21 105.9 207 35.3
ECA236G0643 Erigeron canadensis HOM05D005016 ORTHO05D005740 3.0e-21 105.5 211 35.1
Ca_10118_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 3.9e-21 105.1 210 34.8
arahy.Tifrunner.gnm1.ann1.16ZACY Arachis hypogaea HOM05D005016 ORTHO05D005740 6.6e-21 104.4 192 35.9
CANSAT54G1439 Cannabis sativa HOM05D005016 ORTHO05D005740 1.1e-20 103.6 210 35.2
MELO3C007526.2 Cucumis melo HOM05D005016 ORTHO05D005740 1.1e-20 103.6 205 34.6
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 1.5e-20 103.2 208 35.6
BraA02t08844Z Brassica rapa HOM05D001965 ORTHO05D005740 1.5e-20 103.2 208 34.6
Nitab4.5_0002144g0050 Nicotiana tabacum HOM05D005016 ORTHO05D005740 1.5e-20 103.2 208 34.6
Potri.005G027700 Populus trichocarpa HOM05D005016 ORTHO05D005740 1.5e-20 103.2 208 34.1
RcHm_v2.0_Chr3g0455221 Rosa chinensis HOM05D005016 ORTHO05D005740 1.5e-20 103.2 209 34.9
Duzib177G0724 Durio zibethinus HOM05D005016 ORTHO05D005740 2.5e-20 102.4 210 35.2
AT5G27620 Arabidopsis thaliana HOM05D005016 ORTHO05D005740 3.3e-20 102.1 211 35.1
CSS0032285 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 3.3e-20 102.1 208 32.2
Sp2g20780 Schrenkiella parvula HOM05D005016 ORTHO05D005740 3.3e-20 102.1 211 34.6
Solyc04g072880.3 Solanum lycopersicum HOM05D005016 ORTHO05D005740 3.3e-20 102.1 212 34.0
AL6G39410 Arabidopsis lyrata HOM05D005016 ORTHO05D005740 4.3e-20 101.7 211 35.5
A02p38680 Brassica napus HOM05D001965 ORTHO05D005740 4.3e-20 101.7 208 35.1
TPR.G6101 Trifolium pratense HOM05D005016 ORTHO05D005740 4.3e-20 101.7 210 34.8
C02p58190 Brassica napus HOM05D001965 ORTHO05D005740 5.6e-20 101.3 208 34.6
BraA09t36174Z Brassica rapa HOM05D005016 ORTHO05D005740 5.6e-20 101.3 208 34.1
Os03g0737600 Oryza sativa ssp. japonica HOM05D005016 ORTHO05D005740 5.6e-20 101.3 212 34.4
FvH4_6g06200 Fragaria vesca HOM05D005016 ORTHO05D005740 7.3e-20 100.9 209 34.0
MSTRG.6641 Avicennia marina HOM05D005016 ORTHO05D005740 9.6e-20 100.5 211 33.2
Thhalv10004554m.g Eutrema salsugineum HOM05D005016 ORTHO05D005740 1.3e-19 100.1 211 33.6
Hund07082 Selenicereus undatus HOM05D005016 ORTHO05D005740 1.3e-19 100.1 210 35.2
Sopen04g029030 Solanum pennellii HOM05D005016 ORTHO05D005740 1.3e-19 100.1 212 33.5
arahy.Tifrunner.gnm1.ann1.IT2BBU Arachis hypogaea HOM05D005016 ORTHO05D005740 1.6e-19 99.8 206 34.0
BcaC03g17793 Brassica carinata HOM05D001965 ORTHO05D005740 1.6e-19 99.8 211 34.1
A09p05360 Brassica napus HOM05D005016 ORTHO05D005740 1.6e-19 99.8 212 33.5
Carub.0006s2497 Capsella rubella HOM05D005016 ORTHO05D005740 1.6e-19 99.8 211 35.1
DCAR_002182 Daucus carota HOM05D005016 ORTHO05D005740 2.1e-19 99.4 212 35.4
PGSC0003DMG400009473 Solanum tuberosum HOM05D005016 ORTHO05D005740 2.1e-19 99.4 212 33.5
A06p37400 Brassica napus HOM05D001965 ORTHO05D002112 4.8e-19 98.2 208 34.1
C09p05840 Brassica napus HOM05D005016 ORTHO05D005740 4.8e-19 98.2 208 34.1
BolC9t53511H Brassica oleracea HOM05D005016 ORTHO05D005740 4.8e-19 98.2 208 34.1
BraA06t26664Z Brassica rapa HOM05D001965 ORTHO05D002112 4.8e-19 98.2 208 34.1
THA.LOC104818706 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 4.8e-19 98.2 211 34.6
HPP92_024312 Vanilla planifolia HOM05D005016 ORTHO05D005740 4.8e-19 98.2 212 34.0
AUR62000803 Chenopodium quinoa HOM05D005016 ORTHO05D005740 6.2e-19 97.8 209 34.0
Lsat_1_v5_gn_8_67801 Lactuca sativa HOM05D005016 ORTHO05D005740 6.2e-19 97.8 212 32.5
PGR102G1806 Punica granatum HOM05D005016 ORTHO05D005740 6.2e-19 97.8 209 33.5
SalBow7G0803 Salvia bowleyana HOM05D005016 ORTHO05D005740 8.1e-19 97.4 208 34.1
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 1.1e-18 97.1 205 34.1
CARHR186150 Cardamine hirsuta HOM05D005016 ORTHO05D005740 1.1e-18 97.1 211 33.6
vmacro04578 Vaccinium macrocarpon HOM05D005016 ORTHO05D005740 1.1e-18 97.1 239 31.4
Cc02_g33260 Coffea canephora HOM05D005016 ORTHO05D005740 1.4e-18 96.7 211 34.1
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 1.8e-18 96.3 221 32.6
AUR62005165 Chenopodium quinoa HOM05D005016 ORTHO05D005740 1.8e-18 96.3 209 34.0
CAN.G1034.54 Capsicum annuum HOM05D005016 ORTHO05D005740 2.4e-18 95.9 209 33.0
Solyc01g099310.4 Solanum lycopersicum HOM05D005016 ORTHO05D005740 2.4e-18 95.9 212 32.5
Sopen01g042860 Solanum pennellii HOM05D005016 ORTHO05D005740 2.4e-18 95.9 212 33.5
HanXRQChr12g0365431 Helianthus annuus HOM05D005016 ORTHO05D005740 3.1e-18 95.5 211 32.7
Migut.M00036 Erythranthe guttata HOM05D005016 ORTHO05D005740 5.3e-18 94.7 212 31.6
Phvul.007G179300 Phaseolus vulgaris HOM05D005016 ORTHO05D005740 9.0e-18 94.0 164 37.2
FAN02G4356 Fragaria x ananassa HOM05D005016 ORTHO05D005740 1.5e-17 93.2 206 32.5
Zm00001eb056480 Zea mays HOM05D005016 ORTHO05D005740 2.0e-17 92.8 212 34.0
THA.LOC104821717 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 1.7e-16 89.7 212 34.4
HanXRQChr12g0385591 Helianthus annuus HOM05D005016 ORTHO05D005740 2.2e-16 89.4 228 30.3
SGA_v2.0_scaffold73G24502 Striga asiatica HOM05D005016 ORTHO05D005740 4.9e-16 88.2 208 31.7
FAN05G1032 Fragaria x ananassa HOM05D005016 ORTHO05D005740 6.4e-16 87.8 233 30.0
TWI18G0619 Tripterygium wilfordii HOM05D005016 ORTHO05D005740 1.9e-15 86.3 202 33.2
SEGI_03068 Sequoiadendron giganteum HOM05D005016 ORTHO05D005740 2.4e-15 85.9 64 64.1
Ah.04g160380 Amaranthus hybridus HOM05D005016 ORTHO05D005740 4.2e-15 85.1 193 32.1
ClCG01G016560 Citrullus lanatus HOM05D005016 ORTHO05D005740 5.4e-15 84.7 259 27.4
FAN14G2756 Fragaria x ananassa HOM05D005016 ORTHO05D005740 2.1e-14 82.8 243 28.0
MD04G1203400 Malus domestica HOM05D005016 ORTHO05D005740 7.9e-14 80.9 63 61.9
EL10Ac4g09400 Beta vulgaris HOM05D005016 ORTHO05D005740 1.0e-13 80.5 176 36.4
Gohir.D10G161900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.7e-13 79.7 64 62.5
Gohir.A04G121400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.0e-13 79.0 63 63.5
Gohir.A07G065300 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.0e-13 79.0 63 63.5
Gohir.A10G082600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.0e-13 79.0 63 63.5
Gohir.A13G117600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.0e-13 79.0 63 63.5
Gohir.D01G124500 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.0e-13 79.0 63 63.5
Gohir.D10G225900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.0e-13 79.0 63 63.5
Gohir.A01G127800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.9e-13 78.6 62 64.5
Gohir.D09G110800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.9e-13 78.6 63 63.5
Gohir.A13G041900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 8.7e-13 77.4 63 58.7
SMO367G1055 Selaginella moellendorffii HOM05D005016 ORTHO05D005740 1.5e-12 76.6 206 30.1
PGSC0003DMG400024698 Solanum tuberosum HOM05D005016 ORTHO05D005740 7.4e-12 74.3 63 58.7
Pp3c27_2950 Physcomitrium patens HOM05D005016 ORTHO05D005740 9.6e-12 73.9 211 29.4
BcaB04g19682 Brassica carinata HOM05D005016 ORTHO05D005740 1.6e-11 73.2 66 56.1
Glyma.17G201300 Glycine max HOM05D005016 ORTHO05D005740 1.6e-11 73.2 62 58.1
Mapoly0138s0006 Marchantia polymorpha HOM05D005016 ORTHO05D005740 1.6e-11 73.2 213 29.6
Manes.09G168600 Manihot esculenta HOM05D005016 ORTHO05D005740 6.2e-11 71.2 66 54.5
Pp3c5_10610 Physcomitrium patens HOM05D005016 ORTHO05D005740 6.2e-11 71.2 203 32.5
Peaxi162Scf00235g00215 Petunia axillaris HOM05D005016 ORTHO05D005740 8.1e-11 70.9 48 68.8
Sc09g0003080 Simmondsia chinensis HOM05D005016 ORTHO05D005740 1.4e-10 70.1 66 54.5
AagrBONN_evm.TU.Sc2ySwM_344.774 Anthoceros agrestis HOM05D005016 ORTHO05D005740 1.8e-10 69.7 203 28.6
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 4.0e-10 68.6 211 28.9
Psat0s2745g0160 Pisum sativum HOM05D005016 ORTHO05D005740 5.3e-10 68.2 62 56.5
Psat0s2745g0240 Pisum sativum HOM05D005016 ORTHO05D005740 9.0e-10 67.4 65 50.8
BolC7t44626H Brassica oleracea HOM05D005016 ORTHO05D005740 3.4e-09 65.5 220 28.2
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.4e-09 65.5 43 69.8
unitig_899.g15345 Utricularia gibba HOM05D005016 ORTHO05D005740 3.4e-09 65.5 187 29.4
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 9.9e-09 63.9 43 67.4
Oeu012104.3 Olea europaea HOM05D005016 ORTHO05D005740 1.7e-08 63.2 161 29.2
Prupe.2G191000 Prunus persica HOM05D005016 ORTHO05D005740 4.9e-08 61.6 39 71.8
RcHm_v2.0_Chr7g0227161 Rosa chinensis HOM05D005016 ORTHO05D005740 1.1e-07 60.5 52 53.8
CBR_g29551 Chara braunii HOM05D005016 ORTHO05D005740 7.1e-07 57.8 81 44.4
Mapoly0001s0195 Marchantia polymorpha HOM05D005016 ORTHO05D005740 9.3e-07 57.4 48 52.1
BcaNung04542 Brassica carinata HOM05D001965 ORTHO05D002112 6.0e-06 54.7 33 69.7
SHI00440 Sapria himalayana HOM05D000023 ORTHO05D000014 7.9e-06 54.3 36 69.4


User provided reference genes

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