Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.1e-88 327.8 175 100.0
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.8e-45 186.4 199 54.8
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.3e-43 180.3 201 54.7
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.3e-43 180.3 201 54.7
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.3e-43 180.3 200 54.0
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.7e-43 179.9 201 55.2
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.9e-43 179.1 201 54.2
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 6.6e-43 177.9 201 52.7
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 8.6e-43 177.6 199 55.3
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 2.5e-42 176.0 200 54.0
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 7.2e-42 174.5 202 54.5
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 9.5e-42 174.1 199 54.3
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.5e-42 174.1 198 53.0
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.2e-41 173.7 200 51.5
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.2e-41 173.7 197 54.3
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 2.8e-41 172.6 201 53.7
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 2.8e-41 172.6 199 51.3
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 8.0e-41 171.0 201 52.2
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.4e-40 170.2 201 52.2
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.3e-40 169.5 199 52.3
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 5.2e-40 168.3 199 51.3
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.8e-40 167.9 198 51.5
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 8.9e-40 167.5 198 51.5
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 8.9e-40 167.5 201 54.7
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 1.5e-39 166.8 201 51.7
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.5e-39 166.8 200 55.5
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.4e-39 165.6 203 51.2
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 5.7e-39 164.9 196 51.0
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 7.5e-39 164.5 198 54.5
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 7.5e-39 164.5 201 49.8
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 8.3e-38 161.0 204 52.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 8.3e-38 161.0 202 52.5
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.1e-37 160.6 202 53.5
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.1e-37 160.6 201 53.2
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 2.4e-37 159.5 199 51.3
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.2e-37 159.1 200 48.0
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.2e-37 159.1 204 52.9
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 4.1e-37 158.7 196 52.0
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 5.4e-37 158.3 199 53.8
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 7.0e-37 157.9 205 51.2
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 7.0e-37 157.9 199 49.7
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.6e-36 156.8 204 51.0
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.6e-36 156.8 201 52.2
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.7e-36 156.0 196 48.5
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 5.9e-36 154.8 205 49.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 7.8e-36 154.5 199 50.8
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 7.8e-36 154.5 201 52.2
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.3e-35 152.9 201 50.2
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 5.0e-35 151.8 204 50.0
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 6.6e-35 151.4 195 49.2
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 6.6e-35 151.4 197 51.8
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.5e-34 150.2 204 49.5
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.9e-34 149.8 202 47.5
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 1.9e-34 149.8 199 50.8
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.5e-34 149.4 203 50.2
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 2.5e-34 149.4 203 48.3
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 5.6e-34 148.3 196 46.4
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 5.6e-34 148.3 207 48.8
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 9.5e-34 147.5 182 51.6
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.5e-34 147.5 198 49.0
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 1.6e-33 146.7 196 49.0
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 3.6e-33 145.6 205 47.8
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 4.7e-33 145.2 206 48.1
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 6.2e-33 144.8 213 45.1
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.0e-32 144.1 202 46.5
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.3e-32 142.9 201 49.3
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 8.9e-32 141.0 172 50.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.2e-31 140.6 209 46.4
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 1.2e-31 140.6 206 47.1
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.5e-31 140.2 209 48.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 2.6e-31 139.4 197 48.7
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.6e-31 139.4 186 50.5
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.6e-31 139.4 199 48.2
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 4.4e-31 138.7 204 47.1
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 5.8e-31 138.3 200 49.5
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 5.8e-31 138.3 202 44.6
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.5e-31 137.9 204 48.0
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 9.8e-31 137.5 198 47.0
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 9.8e-31 137.5 200 44.5
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.2e-30 136.3 204 47.1
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 2.2e-30 136.3 205 47.3
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.2e-30 136.3 205 47.3
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.9e-30 136.0 213 46.5
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-30 136.0 204 47.1
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-30 136.0 204 47.1
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 2.9e-30 136.0 204 46.6
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 2.9e-30 136.0 196 47.4
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 4.9e-30 135.2 212 45.8
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 8.3e-30 134.4 204 45.6
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-29 133.7 204 47.1
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.4e-29 133.7 200 46.0
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 2.4e-29 132.9 205 45.9
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 4.6e-28 128.6 205 46.3
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.0e-27 127.5 167 49.1
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.0e-27 127.5 201 44.8
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 1.3e-27 127.1 199 47.2
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.7e-27 126.7 203 44.3
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 2.5e-26 122.9 204 46.1
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 3.3e-26 122.5 151 47.7
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 4.3e-26 122.1 196 44.4
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.1e-25 119.8 204 42.6
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.1e-25 119.8 200 43.5
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.6e-25 119.0 197 43.7
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 3.1e-24 115.9 199 41.7
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 6.8e-24 114.8 165 44.8
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 8.9e-24 114.4 152 47.4
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 2.0e-23 113.2 186 44.6
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 2.0e-23 113.2 201 43.3
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 4.4e-23 112.1 212 41.0
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 4.4e-23 112.1 212 41.0
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 5.8e-23 111.7 210 41.0
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 7.5e-23 111.3 209 40.7
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 7.5e-23 111.3 208 41.8
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.7e-22 110.2 200 39.0
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 3.7e-22 109.0 208 40.9
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 3.7e-22 109.0 208 40.9
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 3.7e-22 109.0 208 40.9
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.7e-22 109.0 191 44.0
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 4.9e-22 108.6 201 37.8
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 8.3e-22 107.8 214 39.7
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 8.3e-22 107.8 214 39.7
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.4e-21 107.1 204 37.7
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.9e-21 106.7 200 41.5
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.4e-21 106.3 207 38.2
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 2.4e-21 106.3 201 36.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.2e-21 105.9 205 41.0
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 4.1e-21 105.5 211 39.3
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 7.1e-21 104.8 185 42.7
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.2e-20 104.0 187 39.6
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-20 103.2 179 38.5
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 6.0e-20 101.7 202 37.6
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 7.8e-20 101.3 201 36.8
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 7.8e-20 101.3 94 62.8
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.0e-19 100.9 176 43.2
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 8.1e-17 91.3 74 60.8
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.1e-16 90.9 167 40.1
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.8e-16 90.1 164 36.6
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 8.9e-16 87.8 196 33.7
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.2e-15 87.4 196 33.2
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 9.9e-15 84.3 164 34.1
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 3.7e-14 82.4 88 53.4
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 4.9e-14 82.0 174 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.4e-13 80.5 139 42.4
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.2e-13 79.3 176 37.5
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.2e-13 79.3 200 31.0
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 4.1e-13 79.0 138 39.1
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.1e-12 76.6 201 29.9
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.7e-11 73.6 173 33.5
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.6e-09 67.0 52 71.2
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 3.6e-09 65.9 50 72.0
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 6.2e-09 65.1 65 56.9
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-08 64.3 43 72.1
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.8e-08 63.5 43 69.8
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 1.5e-07 60.5 138 40.6
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.5e-07 60.5 44 65.9
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 7.6e-07 58.2 43 60.5


User provided reference genes

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