Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 2.1e-220 769.6 706 100.0
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 9.9e-98 362.1 670 74.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.2e-97 360.9 693 72.9
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.1e-94 349.7 315 57.5
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.1e-92 344.4 366 51.9
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 2.1e-92 344.4 328 56.7
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 6.2e-92 342.8 289 60.9
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.1e-91 342.0 712 67.4
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.4e-91 341.7 325 55.7
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.4e-91 341.7 352 52.8
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.4e-91 341.7 326 56.1
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 3.1e-91 340.5 655 74.0
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 7.6e-90 335.9 346 52.3
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.2e-89 334.3 711 66.9
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 6.4e-89 332.8 625 72.8
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.4e-89 332.8 709 66.9
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.1e-88 332.0 654 72.3
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.4e-88 330.9 672 69.9
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 5.4e-88 329.7 676 68.9
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 9.3e-88 328.9 311 57.2
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.6e-87 328.2 274 60.6
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 6.0e-87 326.2 274 61.3
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 7.9e-87 325.9 668 71.7
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.3e-86 325.1 365 48.8
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 6.6e-86 322.8 625 71.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 8.7e-86 322.4 708 66.4
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.9e-85 321.2 683 68.2
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.9e-85 321.2 271 57.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.5e-85 320.9 273 60.4
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 2.5e-85 320.9 699 67.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 4.3e-85 320.1 370 47.0
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 7.4e-85 319.3 348 51.1
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.3e-84 318.5 338 51.8
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.3e-84 318.5 709 66.9
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.6e-84 318.2 317 52.1
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.1e-84 317.8 679 68.2
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.8e-84 317.4 324 51.9
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 3.6e-84 317.0 319 52.0
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.8e-84 316.6 320 53.1
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 6.2e-84 316.2 279 58.1
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 8.1e-84 315.8 345 50.4
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 8.1e-84 315.8 627 72.4
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 5.3e-83 313.2 272 57.4
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 9.0e-83 312.4 677 67.7
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.2e-82 312.0 325 51.7
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.0e-82 311.2 307 52.1
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 5.8e-82 309.7 338 50.9
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 5.8e-82 309.7 310 52.6
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 7.6e-82 309.3 544 79.0
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.7e-81 308.1 303 51.2
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.4e-80 304.3 279 54.8
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 3.2e-80 303.9 258 58.5
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 3.5e-79 300.4 323 51.4
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.0e-78 298.9 351 47.3
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.0e-78 298.9 352 47.4
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.3e-78 298.5 274 56.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.3e-78 298.5 274 55.8
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.8e-78 298.1 354 47.5
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 6.7e-78 296.2 202 66.8
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 8.7e-78 295.8 272 54.8
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 8.7e-78 295.8 357 45.7
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 8.7e-78 295.8 350 47.4
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.5e-77 295.0 266 56.8
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 7.4e-77 292.7 361 46.5
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 2.1e-76 291.2 317 50.5
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 2.8e-76 290.8 324 48.1
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.8e-76 290.8 271 53.1
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.7e-76 290.4 322 49.1
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 6.2e-76 289.7 307 51.5
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 6.2e-76 289.7 233 60.5
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.4e-75 287.7 350 46.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.4e-75 287.7 365 44.4
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 5.3e-75 286.6 303 49.8
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.0e-74 284.6 354 46.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.3e-73 282.0 272 50.7
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.3e-73 282.0 683 65.6
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.3e-73 282.0 271 52.8
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.1e-72 278.9 272 50.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 1.4e-72 278.5 333 46.5
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.9e-72 278.1 310 48.1
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.9e-72 278.1 323 49.2
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.9e-72 278.1 272 49.6
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.5e-72 277.7 268 51.1
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 3.2e-72 277.3 328 44.8
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 4.6e-71 273.5 383 42.0
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.3e-70 271.2 352 45.2
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 8.7e-70 269.2 676 68.0
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 7.4e-69 266.2 274 50.7
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.6e-68 265.0 274 49.6
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 4.8e-68 263.5 274 50.0
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 8.2e-68 262.7 327 43.4
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.4e-67 261.9 274 49.6
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.2e-66 258.8 274 48.9
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 7.6e-66 256.1 274 48.2
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 5.7e-61 240.0 257 49.0
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.8e-59 235.0 159 67.3
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 6.7e-54 216.5 198 51.0
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.6e-53 214.5 160 64.4
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.8e-52 211.1 156 64.1
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.8e-52 210.3 142 66.9
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 4.8e-44 183.7 198 45.5
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 4.5e-34 150.6 96 71.9
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 3.2e-32 144.4 222 33.8
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 6.1e-31 140.2 190 34.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.6e-26 125.6 117 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 2.7e-26 124.8 192 33.9
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 6.6e-17 93.6 170 37.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 3.0e-14 84.7 83 49.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.2e-12 78.6 56 67.9
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 9.2e-11 73.2 51 78.4
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 1.2e-10 72.8 50 78.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.5e-10 71.2 51 72.5
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.5e-10 71.2 266 27.4
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 7.8e-10 70.1 178 24.7
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 2.3e-09 68.6 55 58.2
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 3.9e-09 67.8 180 23.3
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 2.5e-08 65.1 181 24.9
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.5e-08 65.1 51 68.6
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 3.3e-08 64.7 122 27.9
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 5.6e-08 63.9 186 21.0
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 5.6e-08 63.9 180 21.1
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 9.5e-08 63.2 264 23.5
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.6e-07 62.4 161 23.6
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 1.6e-07 62.4 208 24.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.6e-07 62.4 110 40.9
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 2.1e-07 62.0 178 21.9
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 2.1e-07 62.0 186 20.4
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 2.1e-07 62.0 218 23.9
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 2.8e-07 61.6 186 19.9
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.6e-07 61.2 47 66.0
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.7e-07 60.8 175 20.6
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 4.7e-07 60.8 161 26.1
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 4.7e-07 60.8 180 20.6
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 6.2e-07 60.5 218 22.9
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 6.2e-07 60.5 210 24.3
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 8.0e-07 60.1 121 29.8
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 8.0e-07 60.1 166 26.5
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.0e-06 59.7 218 22.5
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 1.4e-06 59.3 182 21.4
AagrBONN_evm.TU.Sc2ySwM_228.3517 Anthoceros agrestis HOM05D003056 ORTHO05D003422 1.8e-06 58.9 120 30.0
ECA240G0024 Erigeron canadensis HOM05D003056 ORTHO05D003422 1.8e-06 58.9 147 23.8
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 3.1e-06 58.2 155 24.5
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 4.0e-06 57.8 219 21.5
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 4.0e-06 57.8 178 20.8
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 4.0e-06 57.8 178 20.8
vmacro16033 Vaccinium macrocarpon HOM05D003056 ORTHO05D003422 4.0e-06 57.8 179 21.2
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 5.2e-06 57.4 119 26.1
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 6.8e-06 57.0 156 24.4
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 6.8e-06 57.0 131 25.2
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 8.9e-06 56.6 145 24.1
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 8.9e-06 56.6 123 26.8


User provided reference genes

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