Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 0.0e+00 2349.3 1164 100.0
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1622.1 1232 66.6
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1592.4 1195 67.8
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1585.5 1240 65.6
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1580.1 1204 66.5
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1566.6 1199 66.3
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1565.8 1244 65.0
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1565.8 1251 64.7
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1564.3 1217 66.0
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1564.3 1221 65.3
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1562.4 1204 65.8
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1562.0 1221 65.1
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1558.9 1239 64.5
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1555.8 1257 64.8
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1554.3 1215 66.1
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1553.5 1219 65.5
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1550.4 1240 65.1
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1549.6 1236 65.1
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1549.6 1243 64.3
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1548.9 1241 64.3
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1545.4 1212 65.3
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1543.5 1257 64.4
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1538.9 1257 64.2
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1538.5 1221 64.6
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1531.9 1202 65.3
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1530.0 1209 64.3
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1529.2 1258 63.1
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1529.2 1208 64.7
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1526.5 1201 65.1
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1526.1 1207 64.8
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1521.9 1237 63.7
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1519.6 1218 64.4
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1517.3 1207 65.3
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1515.0 1082 71.0
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1513.0 1206 64.8
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1510.7 1203 64.2
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1510.4 1207 65.0
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1508.0 1252 63.4
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1504.6 1210 64.4
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1504.6 1206 64.3
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1501.9 1237 63.4
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1501.5 1217 63.6
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1501.1 1210 64.2
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1500.0 1240 63.1
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1499.2 1210 64.0
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1498.0 1247 62.1
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1497.6 1217 63.6
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1496.5 1200 64.3
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1496.1 1219 62.8
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1494.2 1213 63.6
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1492.2 1218 62.4
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1490.7 1204 63.4
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1490.3 1243 62.1
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1488.4 1246 61.8
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1487.2 1194 63.7
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1486.9 1246 61.7
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1485.7 1239 62.1
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1484.9 1202 63.8
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 0.0e+00 1481.5 1217 63.5
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1479.2 1237 62.2
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1478.0 1190 64.4
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1478.0 1198 63.4
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1477.6 1229 63.2
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1476.8 1203 63.8
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1476.1 1201 63.9
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1473.8 1212 63.6
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1473.4 1223 63.0
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1470.7 1217 61.7
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1470.3 1214 62.9
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1470.3 1226 62.8
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1470.3 1226 62.8
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1467.2 1224 62.6
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1466.4 1238 61.9
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1464.1 1293 60.6
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1461.8 1220 62.5
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1461.8 1199 63.1
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1461.4 1210 63.3
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1461.0 1206 63.5
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 0.0e+00 1460.7 1339 58.8
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1460.3 1263 61.0
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1460.3 1263 61.0
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1459.1 1201 62.5
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1458.7 1215 62.3
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1458.4 1203 63.0
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1458.0 1162 63.9
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1452.6 1192 64.2
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1451.8 1213 62.4
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1450.3 1265 60.8
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1447.2 1239 61.2
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 0.0e+00 1444.5 1218 62.4
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1443.3 1180 63.1
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 0.0e+00 1439.5 1305 59.1
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1435.6 1224 61.7
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1433.7 1257 60.7
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1430.2 1243 59.9
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 0.0e+00 1427.5 1238 60.5
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1424.5 1025 69.4
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1416.4 1191 61.3
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1415.6 1191 61.5
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 0.0e+00 1402.1 1206 61.3
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1390.2 1268 58.8
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 0.0e+00 1387.1 1011 68.2
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1380.9 1154 62.7
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 0.0e+00 1363.2 1302 57.1
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1363.2 1205 60.7
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1354.7 1225 58.8
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1322.4 1266 56.7
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 0.0e+00 1312.0 1211 58.3
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1280.4 958 67.1
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 0.0e+00 1274.2 963 66.8
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 0.0e+00 1268.1 1250 56.1
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1251.1 1033 63.5
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1178.7 1227 53.1
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 0.0e+00 1153.3 1247 52.7
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1118.6 876 66.6
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1097.8 958 60.6
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 8.0e-312 1074.7 1212 50.2
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 8.7e-293 1010.7 813 64.1
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 3.4e-281 972.2 1222 45.0
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 4.5e-281 971.8 760 66.1
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 5.5e-279 964.9 1212 46.0
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 7.7e-265 917.9 1010 51.0
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 1.8e-261 906.7 692 67.8
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 2.3e-224 783.5 870 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 6.0e-217 758.8 1048 43.0
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 5.4e-210 735.7 563 65.5
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 3.9e-168 596.7 462 63.6
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 1.4e-157 561.6 498 61.6
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 4.0e-136 490.3 485 55.7
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-134 485.3 480 54.6
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 2.2e-126 458.0 1189 31.2
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 1.4e-125 455.3 340 65.0
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 5.4e-125 453.4 355 64.5
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 1.1e-106 392.5 361 62.6
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 4.1e-101 374.0 237 72.2
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 4.6e-100 370.5 236 72.9
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.7e-91 342.0 240 67.1
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 1.5e-90 339.0 231 68.4
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.5e-82 312.4 294 59.2
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 9.6e-74 283.1 342 47.4
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 4.2e-69 267.7 180 68.3
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.8e-59 235.7 403 39.7
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 3.9e-59 234.6 197 59.9
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 1.9e-53 215.7 254 46.9
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 9.4e-53 213.4 368 39.9
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 2.1e-52 212.2 381 36.5
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 1.1e-42 179.9 337 39.2
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 6.5e-38 164.1 156 55.8
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.1e-37 163.3 238 43.7
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 1.1e-32 146.7 123 61.0
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.7e-31 142.1 120 60.0
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 8.5e-30 137.1 133 55.6
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 4.8e-25 121.3 106 56.6
MD05G1316000 Malus domestica HOM05D000005 ORTHO05D000012 4.5e-23 114.8 171 39.2
Dinv40537 Davidia involucrata HOM05D003523 ORTHO05D004493 5.9e-23 114.4 108 57.4
Cpa.g.sc1016.1 Carica papaya HOM05D003523 ORTHO05D004493 1.0e-22 113.6 102 60.8
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.2e-20 106.7 57 78.9
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 3.4e-18 98.6 74 63.5
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 7.0e-16 90.9 68 58.8
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 5.9e-15 87.8 68 57.4
SEGI_16931 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.2e-12 80.1 59 59.3
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.1e-12 79.3 101 45.5
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 2.8e-12 79.0 44 75.0
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 1.4e-11 76.6 152 44.1
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 4.0e-11 75.1 49 67.3
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 8.9e-11 73.9 65 69.2
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 1.2e-10 73.6 61 62.3
QL05p039585 Quercus lobata HOM05D003523 ORTHO05D004493 7.5e-10 70.9 47 72.3
Nitab4.5_0005271g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 1.8e-08 66.2 46 73.9
MD01G1005800 Malus domestica HOM05D003523 ORTHO05D004493 4.1e-08 65.1 74 48.6
COL.COLO4_31495 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.0e-07 62.8 103 36.9
COL.COLO4_06329 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.7e-07 62.4 103 36.9
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 2.7e-07 62.4 62 50.0


User provided reference genes

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