Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 5.2e-40 167.2 78 100.0
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.3e-14 80.1 45 82.2
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 4.3e-10 67.8 33 90.9
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.6e-09 65.9 38 76.3
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.8e-09 65.1 55 52.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.6e-09 64.7 37 78.4
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 6.2e-09 63.9 43 67.4
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 6.2e-09 63.9 33 84.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 8.0e-09 63.5 37 73.0
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.0e-08 63.2 46 63.0
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.0e-08 63.2 33 81.8
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.4e-08 62.8 33 81.8
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.4e-08 62.8 46 60.9
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.4e-08 62.8 33 81.8
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.4e-08 62.8 33 81.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.4e-08 62.8 33 81.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.8e-08 62.4 37 70.3
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.8e-08 62.4 42 66.7
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 1.8e-08 62.4 42 66.7
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 2.3e-08 62.0 33 78.8
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 2.3e-08 62.0 37 73.0
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 2.3e-08 62.0 33 78.8
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 3.1e-08 61.6 46 56.5
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 4.0e-08 61.2 38 65.8
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 4.0e-08 61.2 35 71.4
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 5.2e-08 60.8 33 78.8
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 5.2e-08 60.8 33 78.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 5.2e-08 60.8 33 78.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 5.2e-08 60.8 33 75.8
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 6.8e-08 60.5 33 75.8
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 6.8e-08 60.5 33 75.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 6.8e-08 60.5 36 75.0
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 6.8e-08 60.5 33 78.8
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 6.8e-08 60.5 35 71.4
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 6.8e-08 60.5 33 72.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 8.9e-08 60.1 33 78.8
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 8.9e-08 60.1 66 45.5
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 8.9e-08 60.1 33 78.8
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.2e-07 59.7 55 50.9
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.2e-07 59.7 33 75.8
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.2e-07 59.7 33 72.7
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.2e-07 59.7 42 61.9
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.2e-07 59.7 33 75.8
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.2e-07 59.7 42 61.9
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.2e-07 59.7 33 78.8
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.5e-07 59.3 33 75.8
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 61.9
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 59.5
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 61.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 61.9
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 61.9
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 61.9
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.0e-07 58.9 42 59.5
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 2.0e-07 58.9 66 43.9
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 2.0e-07 58.9 32 75.0
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 2.0e-07 58.9 37 67.6
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.6e-07 58.5 45 57.8
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.6e-07 58.5 33 78.8
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 2.6e-07 58.5 33 75.8
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 2.6e-07 58.5 32 75.0
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 3.4e-07 58.2 36 72.2
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 3.4e-07 58.2 49 51.0
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 3.4e-07 58.2 42 59.5
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.4e-07 58.2 35 71.4
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.4e-07 58.2 33 72.7
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.4e-07 58.2 33 72.7
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.4e-07 58.2 33 72.7
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.4e-07 58.2 33 72.7
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 4.4e-07 57.8 31 80.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 4.4e-07 57.8 33 72.7
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 5.8e-07 57.4 29 86.2
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 5.8e-07 57.4 33 72.7
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 5.8e-07 57.4 33 72.7
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 7.5e-07 57.0 33 69.7
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 7.5e-07 57.0 33 69.7
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 7.5e-07 57.0 37 64.9
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 7.5e-07 57.0 37 64.9
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 7.5e-07 57.0 37 64.9
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 7.5e-07 57.0 33 75.8
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 7.5e-07 57.0 45 55.6
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 7.5e-07 57.0 33 72.7
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 9.8e-07 56.6 33 69.7
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.3e-06 56.2 33 69.7
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.3e-06 56.2 33 69.7
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.7e-06 55.8 33 66.7
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.7e-06 55.8 33 66.7
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.7e-06 55.8 66 45.5
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.7e-06 55.8 42 57.1
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 3.7e-06 54.7 33 69.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 6.4e-06 53.9 33 69.7
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 6.4e-06 53.9 33 69.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 6.4e-06 53.9 33 69.7
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 6.4e-06 53.9 33 69.7
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 8.3e-06 53.5 33 66.7
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 8.3e-06 53.5 33 66.7
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 8.3e-06 53.5 33 66.7
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 8.3e-06 53.5 33 66.7


User provided reference genes

Program Settings