Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 3.6e-140 501.5 243 100.0
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.4e-136 487.6 243 97.5
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 4.9e-113 411.4 243 79.0
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.6e-111 406.4 243 77.0
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 3.0e-110 402.1 243 75.3
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 3.3e-109 398.7 243 75.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.2e-106 390.2 243 75.3
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 2.6e-106 389.0 241 73.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.6e-106 389.0 243 74.9
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 3.4e-106 388.7 243 72.4
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 4.4e-106 388.3 243 72.0
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.4e-106 388.3 243 74.5
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 5.8e-106 387.9 230 75.7
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.4
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.7e-105 386.3 243 73.3
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 1.7e-105 386.3 246 74.0
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 2.9e-105 385.6 243 72.4
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 4.9e-105 384.8 246 74.8
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 6.4e-105 384.4 244 73.0
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 6.4e-105 384.4 243 72.0
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.4e-104 382.5 243 71.2
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 5.4e-104 381.3 243 72.0
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 71.0
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 9.2e-104 380.6 244 71.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.2e-104 380.6 244 71.3
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 1.2e-103 380.2 241 73.0
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.6e-103 379.8 243 71.6
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 3.5e-103 378.6 243 69.5
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.5e-103 378.6 243 72.0
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 3.5e-103 378.6 244 71.3
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.5e-103 378.6 244 71.3
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 4.6e-103 378.3 244 71.7
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.6e-103 378.3 243 72.0
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 4.6e-103 378.3 243 71.2
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 7.8e-103 377.5 243 72.0
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.7e-102 376.3 243 70.4
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.7e-102 376.3 244 70.1
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 2.3e-102 375.9 241 70.1
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 2.3e-102 375.9 243 69.5
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 2.3e-102 375.9 228 75.0
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.0e-102 375.6 244 71.3
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 3.9e-102 375.2 246 72.4
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.9e-102 375.2 244 70.1
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 6.6e-102 374.4 244 70.5
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 6.6e-102 374.4 241 69.7
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 1.5e-101 373.2 275 65.1
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.9e-101 372.9 244 70.5
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 2.5e-101 372.5 241 69.7
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 2.5e-101 372.5 284 62.7
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 2.5e-101 372.5 274 64.6
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 4.3e-101 371.7 239 68.2
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 5.6e-101 371.3 243 71.2
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 7.3e-101 370.9 244 70.5
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 7.3e-101 370.9 241 71.0
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 2.1e-100 369.4 257 66.5
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 3.6e-100 368.6 243 69.1
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.7e-100 368.2 243 70.4
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 4.7e-100 368.2 244 70.1
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.1e-99 367.1 244 69.7
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.4e-99 366.7 241 70.1
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.4e-99 366.7 241 69.7
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.4e-99 365.9 244 70.1
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 4.0e-99 365.2 244 70.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 6.9e-99 364.4 241 69.3
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 9.0e-99 364.0 241 68.0
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.2e-98 363.6 295 59.7
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 4.4e-98 361.7 241 68.9
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 9.9e-98 360.5 241 68.0
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.7e-97 359.8 241 69.3
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 1.7e-97 359.8 241 68.0
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.9e-97 359.0 241 68.5
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 3.8e-97 358.6 244 69.7
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 4.9e-97 358.2 244 68.0
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 4.9e-97 358.2 244 67.2
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 6.4e-97 357.8 229 72.9
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.1e-96 357.1 244 69.3
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 1.4e-96 356.7 241 67.2
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 2.4e-96 355.9 244 68.4
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 3.2e-96 355.5 242 67.8
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 3.2e-96 355.5 244 68.0
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 7.1e-96 354.4 238 68.5
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.2e-95 353.6 224 71.0
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-95 353.6 242 67.4
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 2.7e-95 352.4 242 67.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 4.6e-95 351.7 242 66.5
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.3e-94 350.1 240 67.5
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.3e-94 350.1 327 54.7
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 3.3e-93 345.5 210 74.3
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 3.3e-93 345.5 253 64.8
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 3.1e-91 339.0 214 72.4
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 6.9e-91 337.8 242 66.1
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.0e-86 323.9 244 63.5
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 1.2e-82 310.5 278 52.5
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.5e-82 310.1 248 58.5
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.0e-82 309.7 204 69.1
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.1e-80 303.9 205 68.3
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 3.2e-80 302.4 205 67.8
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.7e-79 299.3 300 52.0
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.9e-79 297.7 243 59.3
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 5.6e-77 291.6 243 57.6
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 2.8e-76 289.3 221 63.3
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 1.4e-75 287.0 246 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.4e-67 260.4 316 42.7
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 4.5e-58 228.8 259 43.6
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.9e-57 226.1 247 45.3
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 4.7e-55 218.8 253 44.3
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 4.7e-55 218.8 340 40.6
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.8e-52 208.8 250 44.4
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.4e-51 206.5 240 44.6
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 9.4e-48 194.5 125 72.8
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.7e-47 193.0 139 66.2
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.4e-43 180.6 110 72.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.7e-37 158.7 92 76.1
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 9.1e-35 151.4 124 56.5
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.6e-31 140.6 96 65.6
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 8.9e-22 108.2 58 75.9
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.4e-19 99.0 83 56.6
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.4e-19 99.0 83 56.6
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.9e-17 92.8 74 59.5
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.9e-16 90.5 89 50.6
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 7.5e-13 78.6 69 52.2
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.9e-12 76.6 51 64.7
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.4e-11 74.3 51 62.7
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.4e-11 74.3 51 62.7
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 2.7e-10 70.1 122 36.1
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.0e-09 68.2 130 30.8
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 7.3e-08 62.0 43 58.1
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 9.5e-08 61.6 37 70.3
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 2.1e-07 60.5 70 40.0
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 6.2e-07 58.9 67 41.8
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.4e-06 57.8 65 43.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.4e-06 57.8 77 41.6
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.8e-06 57.4 75 38.7
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 2.3e-06 57.0 76 42.1
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 3.1e-06 56.6 68 41.2
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 4.0e-06 56.2 38 57.9
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.9e-06 55.1 73 42.5


User provided reference genes

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