Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.6e-126 454.9 228 100.0
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.7e-97 359.0 194 90.7
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.7e-83 313.2 202 73.8
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 4.9e-83 311.6 202 73.3
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 8.4e-83 310.8 214 69.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 2.5e-82 309.3 202 73.3
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.2e-82 308.5 202 73.3
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.2e-82 308.5 202 73.3
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 5.5e-82 308.1 202 74.3
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 5.5e-82 308.1 202 72.3
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 7.1e-82 307.8 202 72.3
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 7.1e-82 307.8 202 72.3
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 7.1e-82 307.8 214 70.1
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 7.1e-82 307.8 214 69.2
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 9.3e-82 307.4 202 71.8
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 9.3e-82 307.4 202 72.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.2e-81 307.0 202 71.8
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.2e-81 307.0 202 73.3
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 1.6e-81 306.6 215 69.3
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.6e-81 306.6 202 72.3
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.6e-81 306.6 214 70.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.6e-81 306.6 203 71.9
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.1e-81 306.2 202 71.8
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.1e-81 306.2 202 73.3
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.7e-81 305.8 202 71.3
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.7e-81 305.8 202 72.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 2.7e-81 305.8 202 70.8
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 4.6e-81 305.1 202 71.8
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 4.6e-81 305.1 214 69.6
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 6.1e-81 304.7 202 71.8
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.0e-80 303.9 215 69.8
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.0e-80 303.9 203 71.4
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 2.3e-80 302.8 214 70.1
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 3.0e-80 302.4 203 71.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 3.0e-80 302.4 202 70.8
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.9e-80 302.0 203 71.9
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 5.1e-80 301.6 202 70.8
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 6.7e-80 301.2 214 69.2
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 8.7e-80 300.8 214 69.2
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-79 300.4 202 71.3
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-79 300.4 202 71.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.5e-79 300.1 203 72.4
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.5e-79 300.1 197 71.1
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.9e-79 299.7 202 71.3
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.5e-79 299.3 202 71.3
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 2.5e-79 299.3 202 70.3
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.3e-79 298.9 202 71.3
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 5.7e-79 298.1 202 69.8
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 7.4e-79 297.7 204 72.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.4e-79 297.7 202 71.3
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.4e-79 297.7 202 70.8
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.3e-78 297.0 214 69.6
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-78 297.0 203 71.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 2.8e-78 295.8 211 68.7
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.8e-78 295.8 202 68.8
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.7e-78 295.4 203 71.4
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 3.7e-78 295.4 206 71.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 6.3e-78 294.7 202 70.3
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.2e-78 294.3 203 70.4
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 8.2e-78 294.3 196 70.9
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 8.2e-78 294.3 202 69.8
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.1e-77 293.9 202 70.3
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-77 293.9 202 69.8
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.8e-77 293.1 197 70.1
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.8e-77 293.1 214 67.8
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-77 293.1 204 70.6
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.8e-77 293.1 215 67.4
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 3.1e-77 292.4 204 70.1
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.3e-77 291.6 196 70.4
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 5.3e-77 291.6 206 70.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.9e-77 291.2 203 70.0
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 6.9e-77 291.2 200 70.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 9.0e-77 290.8 202 69.8
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.0e-77 290.8 202 69.3
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.2e-76 290.4 202 69.3
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.0e-76 289.7 202 67.3
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.0e-76 289.7 203 69.5
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 3.4e-76 288.9 206 69.9
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.5e-76 288.5 204 68.6
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 5.9e-76 288.1 214 65.9
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 5.9e-76 288.1 214 65.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.0e-75 287.3 202 69.3
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.3e-75 287.0 203 70.0
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.7e-75 286.6 194 70.6
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 5.0e-75 285.0 202 68.8
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 5.0e-75 285.0 203 67.5
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.0e-75 285.0 214 65.0
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 6.5e-75 284.6 226 63.3
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 8.5e-75 284.3 203 67.0
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 8.5e-75 284.3 203 67.0
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.1e-74 283.9 195 68.7
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.4e-74 283.5 255 58.8
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.4e-74 283.5 204 67.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 4.2e-74 282.0 202 66.8
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 9.4e-74 280.8 223 65.9
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.1e-73 279.6 211 66.8
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.7e-73 279.3 169 86.4
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.7e-73 279.3 211 67.3
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 4.6e-73 278.5 221 63.3
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.4e-72 276.9 196 68.4
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.0e-72 275.8 202 68.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.0e-72 275.8 202 68.3
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.9e-72 275.4 214 64.0
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 3.3e-71 272.3 198 66.7
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 4.3e-71 271.9 196 66.8
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.3e-70 270.4 204 64.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-70 270.0 214 63.1
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 2.2e-70 269.6 222 61.3
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.2e-68 263.8 176 72.2
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.5e-68 263.5 189 67.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 7.7e-68 261.2 180 70.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 2.9e-67 259.2 248 54.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 7.2e-66 254.6 180 66.7
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.0e-64 250.8 250 54.0
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 3.9e-64 248.8 273 49.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.7e-59 233.4 153 71.9
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.5e-58 230.3 196 60.2
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.7e-57 225.3 245 51.8
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.9e-56 222.2 163 64.4
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 7.4e-55 218.0 154 66.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 7.4e-55 218.0 189 59.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.1e-53 212.6 222 51.8
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.1e-53 212.6 222 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 5.3e-53 211.8 214 54.2
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.0e-53 211.5 201 57.2
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.5e-50 203.8 223 50.2
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.5e-50 201.8 214 49.5
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.6e-49 199.1 145 65.5
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 6.1e-49 198.4 197 56.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.8e-48 196.8 234 49.6
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 3.8e-43 179.1 141 63.1
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 9.4e-42 174.5 194 49.0
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.8e-40 167.9 117 69.2
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-36 157.5 115 66.1
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 4.4e-31 139.0 94 70.2
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-29 134.4 203 39.4
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.0e-24 117.9 65 83.1
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-23 114.4 118 55.9
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.2e-23 114.4 118 55.9
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.0e-23 113.6 177 40.7
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 9.8e-23 111.3 109 57.8
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 2.2e-22 110.2 105 59.0
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.2e-22 110.2 109 56.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.1e-21 107.8 109 56.0
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 5.4e-21 105.5 190 34.7
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-20 104.4 118 51.7
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-20 104.4 109 55.0
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.1e-18 97.8 155 38.7
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.3e-18 96.3 202 33.2
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.2e-17 94.4 87 58.6
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-16 90.9 155 37.4
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.4e-16 90.9 87 52.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 3.4e-15 86.3 83 57.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.8e-08 63.9 34 88.2
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 6.8e-08 62.0 213 27.2
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 4.4e-07 59.3 60 43.3
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 5.8e-07 58.9 76 38.2
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 7.6e-07 58.5 62 40.3
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.9e-07 58.2 55 45.5
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.2e-06 57.0 55 43.6
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.9e-06 56.6 54 48.1


User provided reference genes

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