Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.3e-274 948.3 494 100.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 9.6e-225 783.5 472 86.2
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.9e-180 636.3 491 69.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 6.8e-178 627.9 490 68.8
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 5.0e-173 611.7 504 67.1
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.1e-167 594.0 503 65.2
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.4e-159 566.2 500 63.0
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.3e-156 555.8 487 63.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 7.3e-156 554.7 480 63.3
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.2e-153 547.4 485 61.9
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.7e-152 543.5 516 60.5
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 8.3e-152 541.2 512 59.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 9.2e-151 537.7 481 60.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.6e-150 537.0 500 60.8
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.3e-149 533.9 499 59.7
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.6e-148 528.5 492 60.4
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 9.5e-148 527.7 492 59.3
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 8.9e-146 521.2 492 58.1
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.2e-145 520.8 496 57.3
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.0e-145 520.0 497 58.4
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 3.4e-145 519.2 452 63.5
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.5e-145 518.1 464 63.4
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.7e-144 516.9 482 62.2
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.9e-144 516.2 504 58.1
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 3.7e-144 515.8 507 59.8
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 4.9e-144 515.4 494 59.3
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 8.3e-144 514.6 495 60.0
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-143 514.2 482 60.2
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-143 514.2 484 59.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.1e-143 514.2 494 59.9
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.4e-143 513.1 463 61.1
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 3.2e-143 512.7 502 57.8
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 4.1e-143 512.3 486 61.1
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 9.2e-143 511.1 498 57.6
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 9.2e-143 511.1 472 60.4
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 2.7e-142 509.6 485 60.2
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 4.6e-142 508.8 454 62.8
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.7e-141 506.9 490 59.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.6e-141 505.0 489 57.5
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 6.6e-141 505.0 487 57.9
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 8.6e-141 504.6 498 58.2
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.5e-140 503.8 467 60.8
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.9e-140 503.4 486 59.5
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.9e-140 503.4 493 59.4
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.9e-140 503.4 498 58.0
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 5.6e-140 501.9 491 58.2
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.1e-139 500.0 468 59.8
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.8e-139 499.6 482 59.3
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.7e-139 498.8 450 62.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 8.1e-139 498.0 473 59.8
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 8.1e-139 498.0 461 60.7
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.1e-138 497.7 478 58.8
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.4e-138 497.3 461 60.5
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 4.0e-138 495.7 482 59.5
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 4.0e-138 495.7 382 68.8
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 4.0e-138 495.7 420 62.9
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 5.2e-138 495.4 491 56.6
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 6.8e-138 495.0 473 60.3
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 6.8e-138 495.0 486 60.1
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 6.8e-138 495.0 472 58.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 8.9e-138 494.6 487 59.5
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.2e-137 494.2 509 55.6
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.2e-137 494.2 380 69.2
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.5e-137 493.8 496 56.5
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.0e-137 493.4 478 59.4
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 9.9e-137 491.1 478 59.2
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 9.9e-137 491.1 446 59.6
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.2e-136 490.0 465 58.1
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.8e-136 489.2 447 60.4
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.9e-136 488.8 491 54.6
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.9e-136 488.8 488 57.4
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.4e-135 487.3 472 57.6
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.9e-135 486.9 453 59.4
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.9e-135 486.9 485 56.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 3.2e-135 486.1 483 57.3
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 9.2e-135 484.6 436 61.2
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.6e-134 483.8 461 56.8
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.1e-134 483.4 417 63.3
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 7.8e-134 481.5 488 58.6
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.3e-133 480.7 490 56.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.3e-133 479.9 486 58.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.3e-133 479.9 490 56.5
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 3.0e-133 479.6 471 57.3
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.1e-132 477.6 493 57.0
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 7.3e-132 474.9 493 53.1
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.4e-130 470.7 467 57.0
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.8e-130 470.3 395 62.0
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.4e-130 469.9 493 54.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.4e-130 469.9 474 57.4
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 3.1e-130 469.5 486 58.4
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 4.0e-130 469.2 482 55.4
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 6.9e-130 468.4 493 55.2
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.4e-129 466.1 477 57.2
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 4.4e-129 465.7 479 57.4
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.8e-129 465.3 487 57.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.3e-128 464.2 482 56.8
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.9e-128 463.0 482 56.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 4.9e-128 462.2 403 63.0
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.9e-127 460.3 492 54.9
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 7.1e-127 458.4 484 56.0
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.2e-126 457.6 481 56.1
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.0e-125 454.5 383 62.4
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.3e-125 453.4 506 53.2
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 5.1e-125 452.2 508 52.8
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.6e-125 451.8 387 63.8
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.5e-124 449.9 477 54.5
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.5e-124 449.9 483 54.7
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 5.6e-124 448.7 457 56.2
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 7.3e-124 448.4 457 56.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 9.6e-124 448.0 485 54.4
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 9.6e-124 448.0 457 56.0
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 6.2e-123 445.3 465 53.5
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 8.1e-123 444.9 481 52.6
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 8.1e-123 444.9 475 54.3
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-122 443.7 502 54.2
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.4e-122 443.4 462 54.3
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.3e-122 442.2 462 55.4
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.0e-122 441.4 426 56.8
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.2e-121 441.0 405 58.8
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.6e-121 439.9 487 54.0
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 3.4e-121 439.5 458 56.3
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.9e-120 436.4 457 54.9
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 3.8e-120 436.0 453 55.0
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 6.4e-120 435.3 457 54.7
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.9e-119 433.7 476 53.8
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 4.2e-119 432.6 461 55.3
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.1e-118 430.3 456 54.4
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 3.5e-118 429.5 469 53.3
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 4.6e-118 429.1 485 52.2
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 7.9e-118 428.3 316 70.6
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.8e-117 427.2 460 54.6
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.7e-117 425.2 406 57.6
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.5e-116 424.1 466 52.4
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-116 423.7 470 52.1
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 7.4e-116 421.8 456 53.7
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 6.2e-115 418.7 457 53.6
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.4e-114 417.5 474 50.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 9.0e-114 414.8 446 54.5
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.9e-112 409.1 467 52.0
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.9e-112 409.1 383 58.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 8.4e-112 408.3 470 51.3
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.2e-111 406.0 473 52.0
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.2e-111 406.0 454 52.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-109 400.2 464 50.6
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 5.8e-105 385.6 406 53.2
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.8e-101 374.0 283 65.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 6.7e-101 372.1 339 60.2
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 4.8e-99 365.9 379 51.7
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.3e-96 357.8 475 49.9
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.5e-89 334.3 464 44.2
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 4.2e-79 299.7 452 45.4
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 7.2e-71 272.3 364 47.0
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 4.8e-67 259.6 192 71.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.3e-64 251.5 592 33.1
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 4.0e-53 213.4 195 65.1
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 7.5e-44 182.6 271 42.4
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.9e-43 180.6 147 65.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 3.6e-38 163.7 313 36.4
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 6.8e-37 159.5 117 61.5
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.8e-36 155.6 137 63.5
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.2e-35 154.5 341 35.5
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.7e-33 147.5 145 61.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.5e-33 147.1 129 62.8
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.0e-32 145.6 129 62.0
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 4.7e-30 136.7 97 66.0
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 6.0e-25 119.8 99 60.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 1.0e-24 119.0 315 33.0
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 6.2e-22 109.8 350 28.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 6.8e-21 106.3 179 41.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 6.8e-21 106.3 179 41.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.6e-14 84.0 68 48.5
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.9e-10 71.6 58 55.2
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.6e-09 67.0 320 28.1
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 2.8e-06 57.8 53 58.5


User provided reference genes

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