Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0681 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 2.2e-185 652.1 318 100.0
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 2.5e-149 532.3 268 97.4
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 8.6e-126 454.1 269 82.2
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 5.2e-123 444.9 269 79.6
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 2.0e-122 443.0 269 80.7
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 1.7e-121 439.9 268 79.1
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 2.9e-121 439.1 269 79.6
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 1.9e-120 436.4 268 77.2
ClCG01G011910 Citrullus lanatus HOM05D004510 ORTHO05D005302 9.2e-120 434.1 270 76.7
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 9.2e-120 434.1 269 78.8
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 6.0e-119 431.4 292 72.6
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 7.8e-119 431.0 269 78.8
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 1.0e-118 430.6 270 77.0
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 3.0e-118 429.1 269 75.5
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 3.9e-118 428.7 270 76.7
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 3.9e-118 428.7 269 75.8
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 3.9e-118 428.7 271 76.4
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 5.1e-118 428.3 273 76.9
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 6.6e-118 427.9 269 77.0
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 1.1e-117 427.2 270 75.2
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 1.5e-117 426.8 270 76.3
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 1.5e-117 426.8 270 76.3
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.5e-117 426.8 269 75.5
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 2.5e-117 426.0 269 77.7
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 4.3e-117 425.2 270 75.6
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 4.3e-117 425.2 270 74.4
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 4.3e-117 425.2 270 74.4
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 5.6e-117 424.9 269 76.6
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 5.6e-117 424.9 271 75.3
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 5.6e-117 424.9 273 76.9
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 7.3e-117 424.5 270 75.2
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 1.2e-116 423.7 269 75.1
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 2.1e-116 422.9 269 77.0
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 2.1e-116 422.9 269 75.5
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 2.1e-116 422.9 269 75.1
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 2.1e-116 422.9 269 75.1
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 2.1e-116 422.9 269 75.1
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 2.8e-116 422.5 269 76.2
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.8e-116 422.5 269 75.5
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 2.8e-116 422.5 270 75.2
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 6.2e-116 421.4 269 74.0
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.1e-115 420.6 270 76.7
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 1.4e-115 420.2 269 73.2
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 1.4e-115 420.2 269 75.1
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 1.4e-115 420.2 268 76.1
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 1.4e-115 420.2 269 76.2
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 1.8e-115 419.9 269 75.5
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 1.8e-115 419.9 269 75.1
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 1.8e-115 419.9 272 75.7
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.4e-115 419.5 270 76.3
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 2.4e-115 419.5 269 76.2
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 3.1e-115 419.1 270 76.3
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 3.1e-115 419.1 272 74.6
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 4.0e-115 418.7 268 75.4
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 4.0e-115 418.7 268 75.0
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 5.2e-115 418.3 269 76.2
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 5.2e-115 418.3 268 73.9
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 8.9e-115 417.5 268 75.4
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 8.9e-115 417.5 269 76.6
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 1.2e-114 417.2 269 74.3
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 2.0e-114 416.4 269 74.3
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 2.6e-114 416.0 276 73.9
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 3.4e-114 415.6 269 75.1
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 4.4e-114 415.2 269 76.2
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 4.4e-114 415.2 269 76.2
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 5.8e-114 414.8 269 74.3
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 5.8e-114 414.8 269 72.9
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 5.8e-114 414.8 269 74.7
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 9.9e-114 414.1 268 73.1
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 1.3e-113 413.7 269 74.3
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 1.7e-113 413.3 269 75.5
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 3.8e-113 412.1 269 74.0
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 3.8e-113 412.1 269 74.0
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 3.8e-113 412.1 269 74.0
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 3.8e-113 412.1 269 74.0
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 1.4e-112 410.2 268 73.5
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 1.9e-112 409.8 269 74.3
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 9.2e-112 407.5 269 73.6
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 1.6e-111 406.8 269 72.5
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 2.7e-111 406.0 269 73.6
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 3.5e-111 405.6 270 73.3
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 3.5e-111 405.6 270 73.3
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 3.5e-111 405.6 270 73.3
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 7.8e-111 404.4 294 68.7
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.3e-110 403.7 297 68.0
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 1.7e-110 403.3 270 73.0
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 1.5e-109 400.2 268 74.3
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 2.1e-108 396.4 269 71.4
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 1.1e-107 394.0 268 72.4
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 2.0e-106 389.8 269 69.5
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 2.6e-106 389.4 269 69.1
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 3.4e-106 389.0 269 70.3
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 9.9e-106 387.5 269 69.1
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 9.9e-106 387.5 303 65.7
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 1.3e-105 387.1 269 69.9
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.3e-105 387.1 269 69.9
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.7e-105 386.7 269 69.5
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 4.9e-105 385.2 269 68.8
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 1.1e-104 384.0 269 69.9
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 1.6e-103 380.2 269 67.7
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 3.9e-102 375.6 312 62.5
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 9.6e-101 370.9 268 66.8
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 2.1e-100 369.8 270 66.7
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 9.0e-99 364.4 247 71.3
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 3.2e-96 355.9 260 68.5
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.3e-94 350.5 272 63.2
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 4.3e-93 345.5 269 62.8
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 1.4e-91 340.5 272 62.1
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.5e-90 337.0 274 63.1
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 3.4e-90 335.9 270 61.9
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 3.8e-89 332.4 271 58.7
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.6e-87 325.5 272 61.0
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 3.9e-86 322.4 265 60.4
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 1.1e-83 314.3 253 59.7
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.8e-83 313.5 267 59.6
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 5.3e-83 312.0 272 59.9
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 3.4e-66 256.1 169 75.1
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 1.6e-63 247.3 292 44.9
Cpa.g.sc32.21 Carica papaya HOM05D004510 ORTHO05D005302 5.1e-62 242.3 151 78.8
Hma1.2p1_0063F.1_g034470 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 1.5e-53 214.2 137 76.6
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.7e-49 200.7 156 67.9
Haze_23368 Corylus avellana HOM05D004510 ORTHO05D005302 3.2e-48 196.4 131 70.2
Oeu040835.1 Olea europaea HOM05D000119 ORTHO05D000054 2.2e-44 183.7 130 65.4
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 8.3e-36 155.2 290 35.5
Migut.I00819 Erythranthe guttata HOM05D000103 ORTHO05D000049 5.0e-33 146.0 101 63.4
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 1.3e-28 131.3 82 74.4
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 1.2e-26 124.8 72 81.9
RcHm_v2.0_Chr5g0016631 Rosa chinensis HOM05D004510 ORTHO05D005302 2.3e-25 120.6 80 71.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.9e-24 117.5 70 81.4
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 2.3e-22 110.5 321 30.5
RcHm_v2.0_Chr1g0324351 Rosa chinensis HOM05D004510 ORTHO05D005302 9.8e-21 105.1 63 77.8
SEGI_10684 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 9.2e-19 98.6 75 66.7
Aqoxy5G02821 Aquilegia oxysepala HOM05D001090 ORTHO05D006167 8.1e-07 58.9 127 30.7
Ca_16392_v3 Cicer arietinum L. HOM05D001159 ORTHO05D009291 1.1e-06 58.5 310 24.5
Lsat_1_v5_gn_8_125581 Lactuca sativa HOM05D001090 ORTHO05D006167 1.8e-06 57.8 130 26.9
BolC7t43152H Brassica oleracea HOM05D001159 ORTHO05D009291 3.1e-06 57.0 240 24.2
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 5.2e-06 56.2 148 28.4
Nn4g25350 Nelumbo nucifera HOM05D001090 ORTHO05D006167 5.2e-06 56.2 128 28.9
BraA06t27644Z Brassica rapa HOM05D001159 ORTHO05D009291 6.8e-06 55.8 212 25.0
A06p47760 Brassica napus HOM05D001159 ORTHO05D009291 8.9e-06 55.5 212 25.0
DCAR_002936 Daucus carota HOM05D001090 ORTHO05D006167 8.9e-06 55.5 127 28.3


User provided reference genes

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