Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-175 619.8 306 100.0
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 5.7e-127 458.0 303 75.6
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.8e-121 439.1 303 71.9
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 6.1e-121 438.0 306 73.5
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.1e-120 435.6 302 72.5
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 3.1e-120 435.6 303 71.9
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 6.8e-120 434.5 303 71.6
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 8.9e-120 434.1 303 71.6
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 1.2e-119 433.7 303 71.3
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 2.0e-119 433.0 303 71.0
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 2.6e-119 432.6 303 73.6
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.6e-119 432.6 303 71.0
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 3.4e-119 432.2 305 71.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 3.4e-119 432.2 299 73.6
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 3.4e-119 432.2 303 71.0
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 7.5e-119 431.0 303 71.6
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 7.5e-119 431.0 302 70.9
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 7.5e-119 431.0 303 71.9
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 9.8e-119 430.6 301 73.4
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 9.8e-119 430.6 301 73.4
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 9.8e-119 430.6 303 71.3
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.3e-118 430.3 303 71.6
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.9e-118 429.1 301 73.1
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.9e-118 429.1 303 70.3
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 2.9e-118 429.1 306 72.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 4.9e-118 428.3 303 70.6
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 4.9e-118 428.3 303 70.3
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 6.4e-118 427.9 302 70.2
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 8.3e-118 427.6 302 73.5
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 8.3e-118 427.6 303 71.3
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 8.3e-118 427.6 303 70.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.1e-117 427.2 302 71.2
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.1e-117 427.2 304 73.4
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.1e-117 427.2 299 72.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.4e-117 426.8 303 71.0
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 1.4e-117 426.8 302 71.2
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 1.4e-117 426.8 303 70.6
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.4e-117 426.0 303 70.6
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 4.1e-117 425.2 303 71.0
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 5.4e-117 424.9 302 70.5
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 5.4e-117 424.9 302 71.2
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 7.0e-117 424.5 303 70.6
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.2e-116 423.7 303 69.6
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.2e-116 423.7 303 71.3
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 2.7e-116 422.5 304 70.4
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 2.7e-116 422.5 303 70.6
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 2.7e-116 422.5 302 70.5
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.7e-116 422.5 280 75.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 3.5e-116 422.2 302 70.5
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 4.6e-116 421.8 304 70.4
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 4.6e-116 421.8 303 70.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 6.0e-116 421.4 303 69.6
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 7.8e-116 421.0 306 70.9
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.0e-115 420.6 303 70.0
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.3e-115 420.2 303 70.0
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.7e-115 419.9 303 69.6
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 2.3e-115 419.5 311 69.8
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 2.3e-115 419.5 303 70.6
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 3.9e-115 418.7 303 70.6
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 1.1e-114 417.2 306 71.2
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 1.1e-114 417.2 303 70.3
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.5e-114 416.8 301 71.1
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.3e-114 415.6 303 68.3
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 3.3e-114 415.6 304 68.8
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 5.6e-114 414.8 302 70.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 7.3e-114 414.5 302 70.5
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 9.5e-114 414.1 305 69.5
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 4.7e-113 411.8 303 67.0
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 6.2e-113 411.4 303 69.0
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.1e-112 410.6 302 68.5
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 3.1e-112 409.1 301 68.4
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 6.8e-112 407.9 308 66.6
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.2e-111 407.1 302 68.9
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 4.4e-111 405.2 299 69.2
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 5.8e-111 404.8 303 67.0
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 4.9e-110 401.7 303 67.7
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.1e-109 400.6 303 66.7
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.4e-109 400.2 301 69.1
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.9e-109 399.8 302 67.5
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.4e-109 399.4 302 68.9
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 3.2e-109 399.1 306 67.3
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 7.8e-108 394.4 305 66.6
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 3.0e-107 392.5 305 66.6
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.9e-107 392.1 305 66.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 8.6e-107 391.0 305 66.2
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 8.6e-107 391.0 305 65.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 1.1e-106 390.6 305 66.6
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.1e-106 390.6 305 66.2
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.1e-106 390.6 305 66.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.1e-106 390.6 305 66.6
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 7.3e-106 387.9 305 65.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.1e-104 384.0 303 64.7
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 4.4e-103 378.6 305 65.6
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.2e-100 370.5 302 63.2
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 6.0e-100 368.2 264 70.8
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 3.0e-99 365.9 304 63.2
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.6e-97 360.1 298 61.1
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 5.8e-95 351.7 301 59.8
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 1.1e-93 347.4 332 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 1.4e-93 347.1 295 60.0
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 9.2e-93 344.4 332 54.2
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.8e-89 332.8 303 60.1
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 8.4e-86 321.2 300 56.3
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 9.3e-85 317.8 302 57.6
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.2e-84 317.4 310 56.5
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.7e-83 313.5 306 54.2
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.1e-82 310.8 218 72.0
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 9.0e-80 301.2 303 53.1
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 4.6e-76 288.9 256 58.6
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.8e-75 287.0 276 52.5
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 6.7e-75 285.0 298 50.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.9e-74 283.5 257 58.0
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.9e-70 269.6 302 47.0
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 1.1e-64 251.1 229 59.0
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 3.0e-59 233.0 190 62.6
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.8e-56 223.8 175 61.1
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.5e-50 203.4 154 66.2
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 1.9e-37 160.6 103 76.7
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.6e-31 141.0 110 67.3
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 3.7e-25 119.8 98 61.2
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.2e-21 106.7 84 69.0
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.9e-17 92.8 72 69.4
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 8.3e-17 92.0 156 39.1
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.7e-15 85.5 62 62.9
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 8.6e-14 82.0 59 67.8


User provided reference genes

Program Settings