Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.0e-182 643.3 332 100.0
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.9e-122 441.0 245 93.9
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.5e-117 425.2 301 74.8
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 6.5e-116 421.4 303 73.9
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.1e-115 420.6 291 77.0
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.5e-115 419.5 302 73.5
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 4.2e-115 418.7 300 75.3
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.2e-114 417.2 297 75.1
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.7e-114 416.0 292 76.0
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 3.5e-114 415.6 299 74.2
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 2.3e-113 412.9 301 75.1
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.9e-113 412.1 303 73.9
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 6.7e-113 411.4 300 75.3
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 6.7e-113 411.4 303 71.0
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.9e-112 409.8 303 70.6
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.5e-112 409.5 301 73.1
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 5.7e-112 408.3 296 73.0
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 5.7e-112 408.3 292 74.7
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 1.3e-111 407.1 300 75.3
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.2e-111 406.4 294 73.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.8e-111 406.0 292 72.9
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.7e-111 405.6 296 73.0
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 4.8e-111 405.2 299 72.2
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.3e-111 404.8 299 71.9
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 6.3e-111 404.8 301 72.1
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.1e-110 404.1 296 72.6
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 1.1e-110 404.1 294 72.1
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.8e-110 403.3 296 72.6
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.4e-110 402.9 297 73.1
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 4.1e-110 402.1 297 73.7
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 4.1e-110 402.1 292 73.6
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 5.3e-110 401.7 301 70.8
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 6.9e-110 401.4 303 71.6
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 9.0e-110 401.0 296 71.6
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 9.0e-110 401.0 299 73.2
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.5e-109 400.2 299 70.6
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 5.9e-109 398.3 318 68.9
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 5.9e-109 398.3 296 70.6
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 5.9e-109 398.3 294 71.8
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.3e-108 397.1 304 70.4
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.7e-108 396.7 318 68.6
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.7e-108 396.7 304 71.1
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 3.8e-108 395.6 289 72.7
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 6.5e-108 394.8 329 66.9
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.9e-107 393.3 321 67.9
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.5e-107 392.9 293 71.3
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 3.2e-107 392.5 303 70.0
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 4.2e-107 392.1 301 68.1
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 7.2e-107 391.3 298 70.8
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 9.3e-107 391.0 301 70.8
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 4.6e-106 388.7 294 71.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 7.9e-106 387.9 296 72.0
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.8e-105 386.7 300 69.7
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 2.3e-105 386.3 300 71.0
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 3.0e-105 386.0 288 70.8
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 3.9e-105 385.6 319 63.9
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 3.9e-105 385.6 302 70.2
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 5.1e-105 385.2 299 70.6
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 6.7e-105 384.8 300 69.3
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 3.3e-104 382.5 298 70.5
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 9.7e-104 380.9 351 62.1
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 4.8e-103 378.6 298 69.1
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 6.3e-103 378.3 282 72.7
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.4e-102 377.1 285 70.9
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.4e-102 376.3 302 66.9
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 3.1e-102 375.9 293 66.9
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 4.1e-102 375.6 289 69.9
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 4.1e-102 375.6 289 69.9
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 4.1e-102 375.6 302 66.9
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 3.4e-101 372.5 362 60.5
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 4.5e-101 372.1 289 69.6
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 2.5e-99 366.3 255 74.9
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 5.5e-99 365.2 290 67.2
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.2e-98 364.0 306 67.6
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 2.1e-98 363.2 275 71.3
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 2.7e-98 362.8 315 64.4
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 3.6e-98 362.5 270 70.4
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 5.1e-97 358.6 343 59.8
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.5e-96 357.1 277 67.9
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 9.7e-96 354.4 252 76.6
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 2.2e-95 353.2 260 71.9
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.8e-95 352.8 319 61.4
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.8e-94 350.1 283 66.8
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 5.3e-94 348.6 274 69.7
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 2.0e-93 346.7 248 76.2
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.5e-93 345.5 370 54.6
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.3e-92 344.0 256 72.7
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 1.3e-92 344.0 330 59.7
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 1.9e-91 340.1 289 64.7
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.9e-91 340.1 253 71.1
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 4.7e-90 335.5 296 60.5
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 5.2e-89 332.0 252 71.0
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 2.0e-88 330.1 251 71.7
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.4e-86 323.9 322 58.1
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.8e-86 323.6 200 81.0
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 3.1e-86 322.8 254 66.5
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 9.1e-86 321.2 204 79.9
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.6e-85 320.5 207 78.3
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 7.7e-85 318.2 299 63.2
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.2e-83 312.8 201 77.1
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 3.2e-83 312.8 198 81.3
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 7.2e-83 311.6 247 67.6
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 7.2e-83 311.6 371 52.8
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.2e-82 310.8 325 54.2
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-82 310.5 292 59.6
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 2.7e-82 309.7 246 69.5
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 6.1e-82 308.5 291 58.4
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.2e-80 304.3 303 61.1
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 2.0e-80 303.5 240 71.7
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 3.3e-80 302.8 259 67.2
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 8.2e-79 298.1 235 70.6
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.1e-78 295.8 265 62.6
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.5e-77 292.7 185 82.2
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 7.5e-72 275.0 199 67.3
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.1e-70 269.2 227 62.6
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.1e-70 268.1 290 53.1
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 4.2e-67 259.2 226 65.9
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 5.5e-67 258.8 287 52.3
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 7.2e-67 258.5 165 80.6
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.6e-66 257.3 342 46.5
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 3.3e-59 233.0 155 78.7
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 8.0e-58 228.4 203 62.6
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 4.7e-50 202.6 127 81.1
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 1.7e-47 194.1 161 64.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 7.8e-29 132.1 137 58.4
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.0e-28 131.7 305 30.8
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.1e-27 128.3 330 33.9
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 2.8e-18 97.1 334 29.3
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 4.5e-16 89.7 68 75.0
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 7.6e-16 89.0 77 63.6
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.3e-12 77.4 45 93.3
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 3.9e-12 76.6 57 64.9
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.9e-11 74.3 52 73.1
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 5.8e-08 62.8 49 65.3
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 2.2e-07 60.8 180 35.0
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 7.1e-06 55.8 67 52.2


User provided reference genes

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