Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.1e-83 313.2 152 100.0
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 5.7e-67 257.7 155 74.8
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 72.9
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 72.9
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.5e-64 249.6 155 73.5
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 4.5e-64 248.1 155 71.6
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 71.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 72.3
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.2e-63 245.7 155 70.3
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.8e-63 245.0 155 71.0
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.8e-63 245.0 155 72.3
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 6.5e-63 244.2 155 71.0
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 8.5e-63 243.8 155 70.3
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 69.7
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 72.3
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.4e-62 243.0 155 71.0
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 71.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 71.0
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 69.7
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 3.2e-62 241.9 155 70.3
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.5e-62 241.1 155 69.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 7.2e-62 240.7 155 68.4
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 9.3e-62 240.4 155 71.0
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 69.0
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 71.0
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.7e-61 238.8 155 71.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.6e-61 238.4 154 68.8
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 4.6e-61 238.0 155 72.3
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 4.6e-61 238.0 155 70.3
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 4.6e-61 238.0 155 71.0
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.3e-60 236.5 155 71.0
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.3e-60 236.5 155 67.7
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.3e-60 236.5 155 69.0
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 69.7
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.9e-60 235.0 155 69.0
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 6.7e-60 234.2 155 69.0
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 6.7e-60 234.2 155 69.7
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.1e-59 233.4 155 67.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.1e-59 233.4 155 70.3
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.9e-59 232.6 155 70.3
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.9e-59 232.6 155 68.4
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.5e-59 232.3 155 67.7
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.5e-59 232.3 155 69.7
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 5.7e-59 231.1 155 70.3
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 7.4e-59 230.7 155 68.4
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.7e-59 230.3 155 69.7
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.6e-58 229.6 155 69.0
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.6e-58 229.6 155 66.5
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 69.0
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 70.3
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.8e-58 228.8 155 68.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 8.2e-58 227.3 155 65.8
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.8e-57 226.1 155 66.5
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.8e-57 226.1 155 68.4
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 3.1e-57 225.3 155 65.2
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 65.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 5.3e-57 224.6 155 66.5
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 6.9e-57 224.2 156 69.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 6.9e-57 224.2 156 69.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 9.0e-57 223.8 155 67.1
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.0e-56 222.6 152 67.8
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 3.4e-56 221.9 155 65.8
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 5.9e-56 221.1 155 65.2
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 5.9e-56 221.1 155 63.9
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 7.7e-56 220.7 155 68.4
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 2.2e-55 219.2 174 59.8
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.9e-55 218.8 155 65.2
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 3.8e-55 218.4 155 66.5
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 5.0e-55 218.0 155 65.8
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.5e-55 217.6 145 66.2
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 8.5e-55 217.2 155 63.9
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 8.5e-55 217.2 153 65.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 8.5e-55 217.2 155 61.3
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 8.5e-55 217.2 151 65.6
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.4e-54 216.5 155 66.5
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.9e-54 216.1 155 62.6
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 4.2e-54 214.9 155 64.5
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 7.2e-54 214.2 152 65.1
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 64.5
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 64.5
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.6e-53 213.0 152 64.5
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-53 213.0 150 67.3
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 2.7e-53 212.2 155 62.6
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 3.6e-53 211.8 153 64.7
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.0e-52 210.3 153 62.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.0e-52 210.3 155 61.3
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.0e-52 210.3 155 61.3
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.4e-52 209.9 153 63.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-52 209.9 155 61.3
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 2.3e-52 209.1 153 64.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.0e-52 208.8 150 66.7
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.9e-52 208.4 153 60.8
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 5.1e-52 208.0 145 64.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 6.7e-52 207.6 147 63.9
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-51 206.8 155 60.6
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 2.6e-51 205.7 155 60.0
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.7e-51 204.5 124 71.8
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 9.7e-51 203.8 153 62.7
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.7e-50 203.0 154 58.4
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 4.8e-50 201.4 214 50.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 4.8e-50 201.4 124 71.0
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 6.3e-50 201.1 147 63.9
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.3e-49 198.0 162 59.9
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 2.0e-48 196.1 152 60.5
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.4e-48 195.3 123 70.7
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.3e-47 193.4 148 60.8
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.7e-47 193.0 188 51.1
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 3.8e-47 191.8 147 58.5
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 8.5e-47 190.7 155 58.1
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.9e-46 189.5 149 57.7
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 9.4e-46 187.2 155 60.0
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 9.4e-46 187.2 136 63.2
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.8e-44 183.0 150 54.7
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 6.7e-44 181.0 156 53.8
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.4e-43 178.3 148 66.9
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.7e-42 176.4 151 51.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.2e-42 176.0 151 51.0
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 2.8e-42 175.6 151 51.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.7e-42 175.3 151 51.7
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 6.3e-42 174.5 124 61.3
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 9.1e-41 170.6 114 68.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.2e-40 170.2 153 53.6
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 2.6e-40 169.1 146 56.2
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.5e-38 163.3 144 53.5
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 4.2e-38 161.8 99 74.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.2e-38 161.0 104 69.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 8.0e-37 157.5 109 64.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.8e-36 156.4 109 63.3
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.0e-35 152.9 103 64.1
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 3.7e-34 148.7 91 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.5e-30 136.7 148 49.3
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.6e-29 132.1 109 55.0
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.0e-28 130.6 137 48.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 5.4e-25 118.2 83 62.7
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.9e-23 112.5 150 39.3
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 4.0e-20 102.1 134 41.8
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.3e-18 97.1 143 36.4
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 4.1e-17 92.0 50 76.0
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.5e-16 88.6 61 63.9
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.5e-16 88.6 61 63.9
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 6.6e-15 84.7 115 33.9
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.7e-13 78.6 68 54.4
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 5.2e-12 75.1 118 32.2
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.4e-11 72.4 68 51.5


User provided reference genes

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