Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 7.5e-147 523.9 270 100.0
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 7.0e-145 517.3 270 98.5
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.0e-107 392.9 273 75.8
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.0e-107 392.9 273 75.8
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.6e-107 392.5 272 75.4
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.9e-102 376.3 274 72.3
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.8e-101 372.5 272 72.1
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.7e-98 363.2 270 71.5
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 6.5e-98 361.3 268 69.8
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 8.4e-98 360.9 273 70.7
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.5e-97 359.4 272 70.6
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.2e-96 357.1 273 67.8
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.2e-96 357.1 272 68.0
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.1e-96 356.3 273 70.0
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 3.5e-96 355.5 269 68.8
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.5e-96 355.5 274 70.1
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.0e-95 354.0 272 68.4
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.3e-95 353.6 273 67.4
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 1.3e-95 353.6 275 66.9
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.8e-95 353.2 273 70.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 3.0e-95 352.4 276 69.2
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 6.7e-95 351.3 276 68.8
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 6.7e-95 351.3 268 68.7
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 8.7e-95 350.9 272 67.3
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 8.7e-95 350.9 271 68.3
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.1e-94 350.5 272 67.3
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 1.5e-94 350.1 273 67.0
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.3e-94 349.0 272 67.3
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 3.3e-94 349.0 275 66.9
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.3e-94 348.6 269 68.4
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 4.3e-94 348.6 272 67.6
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 5.7e-94 348.2 273 68.9
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 7.4e-94 347.8 274 69.0
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 7.4e-94 347.8 275 68.7
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 9.6e-94 347.4 272 68.8
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-93 347.1 273 67.8
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.3e-93 347.1 285 68.1
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.6e-93 346.7 273 69.2
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 2.1e-93 346.3 272 66.2
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 2.1e-93 346.3 272 66.9
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 2.8e-93 345.9 273 68.5
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.7e-93 345.5 274 68.2
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 4.8e-93 345.1 269 68.8
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.8e-93 345.1 275 67.6
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 4.8e-93 345.1 274 65.3
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.2e-93 344.7 275 67.6
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.1e-92 344.0 273 68.9
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 1.1e-92 344.0 275 68.4
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.4e-92 343.6 277 69.0
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.8e-92 343.2 274 67.2
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.8e-92 343.2 272 65.4
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.4e-92 342.8 272 65.4
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.1e-92 342.4 274 66.4
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 6.9e-92 341.3 272 65.4
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 9.0e-92 340.9 274 67.9
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.0e-92 340.9 275 67.6
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.0e-92 340.9 275 67.6
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-91 340.5 273 66.7
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.2e-91 340.5 273 66.7
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.5e-91 340.1 272 65.1
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 2.6e-91 339.3 272 66.9
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 4.5e-91 338.6 273 66.7
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 4.5e-91 338.6 274 66.8
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.5e-91 338.6 275 67.3
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.8e-91 338.2 273 66.7
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 7.6e-91 337.8 273 66.3
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.0e-90 337.4 284 64.1
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 2.2e-90 336.3 273 67.0
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.2e-90 336.3 273 66.3
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.8e-90 335.5 273 66.7
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 3.8e-90 335.5 273 65.9
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.0e-90 335.1 273 66.3
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 5.0e-90 335.1 275 65.8
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 6.5e-90 334.7 271 66.1
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.1e-89 334.0 273 65.6
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.9e-89 333.2 273 65.2
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.9e-89 333.2 273 66.7
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.9e-89 333.2 273 65.6
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.9e-89 333.2 273 65.6
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.9e-89 333.2 274 66.8
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.2e-89 332.4 360 55.0
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 7.1e-89 331.3 272 64.0
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.2e-88 330.5 287 63.8
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.2e-88 330.5 271 66.1
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.6e-88 330.1 300 61.0
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 4.6e-88 328.6 273 67.8
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 6.1e-88 328.2 271 65.7
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 6.1e-88 328.2 272 65.8
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.1e-88 328.2 287 62.4
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 7.9e-88 327.8 284 63.4
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.0e-87 327.4 272 64.0
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.3e-87 327.0 272 65.8
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 2.3e-87 326.2 272 63.2
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.9e-87 325.5 274 63.9
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 5.1e-87 325.1 273 68.1
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 5.1e-87 325.1 271 63.1
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 1.5e-86 323.6 274 63.1
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.5e-86 323.6 274 65.3
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.5e-86 322.8 273 66.7
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 4.3e-86 322.0 273 64.1
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 7.4e-86 321.2 276 63.0
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 9.7e-86 320.9 268 63.8
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.4e-84 317.0 278 62.9
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.8e-84 316.6 298 60.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 6.9e-84 314.7 267 62.5
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.0e-83 313.2 345 52.5
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.6e-83 312.8 256 64.8
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 1.3e-82 310.5 274 60.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.2e-82 309.7 271 61.6
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 6.5e-82 308.1 272 61.4
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.5e-81 306.2 332 53.6
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 3.2e-81 305.8 258 64.3
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.2e-80 303.9 308 55.2
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.2e-80 303.9 308 55.2
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 3.6e-80 302.4 261 62.5
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 4.6e-80 302.0 295 56.6
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.4e-79 300.4 270 60.0
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.3e-77 293.9 238 67.2
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.4e-76 290.4 333 52.6
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.4e-76 290.4 232 66.8
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.8e-76 290.0 232 64.7
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 2.4e-76 289.7 317 54.6
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.0e-75 286.6 274 59.9
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 2.0e-75 286.6 236 64.0
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 6.5e-74 281.6 232 65.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 8.5e-74 281.2 274 57.7
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.4e-73 280.4 225 68.0
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 6.1e-72 275.0 234 63.2
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.3e-71 273.1 233 62.7
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 8.8e-71 271.2 267 56.9
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.6e-70 269.6 232 62.9
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 9.7e-70 267.7 262 58.8
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 4.5e-67 258.8 232 62.5
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.9e-66 256.1 174 75.3
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.6e-64 250.4 286 50.7
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 8.8e-63 244.6 271 54.6
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 3.7e-61 239.2 263 52.1
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 4.1e-60 235.7 339 44.0
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 7.7e-59 231.5 229 55.9
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 2.2e-58 229.9 278 49.6
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 8.5e-58 228.0 182 66.5
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.2e-57 225.7 285 48.1
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.6e-56 223.8 259 49.0
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 6.1e-56 221.9 259 48.3
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-55 219.9 227 56.4
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 2.6e-54 216.5 162 68.5
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 4.4e-54 215.7 172 67.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 2.0e-51 206.8 169 63.3
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.7e-50 203.8 203 57.6
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.9e-50 203.0 174 62.6
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 5.0e-50 202.2 177 62.1
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.2e-49 199.1 272 44.9
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 5.5e-49 198.7 132 76.5
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 2.7e-48 196.4 163 65.6
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 6.1e-48 195.3 233 48.1
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 4.4e-46 189.1 150 68.7
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.8e-44 183.7 156 64.7
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.3e-42 177.6 164 59.8
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.5e-41 173.3 213 50.2
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.6e-40 170.6 257 45.9
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.7e-38 162.2 126 66.7
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.4e-36 157.5 233 41.2
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.7e-35 153.3 202 48.5
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.6e-35 152.5 134 57.5
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 3.4e-30 136.3 172 48.8
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.3e-29 134.4 150 54.7
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.2e-27 127.9 134 53.0
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.7e-26 124.0 88 71.6
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.5e-25 118.2 184 39.7
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.2e-24 115.5 160 43.8
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.0e-22 110.5 73 75.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.4e-22 109.8 91 67.0
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 6.6e-18 95.5 149 42.3
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.9e-17 94.0 69 69.6
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 9.5e-17 91.7 73 67.1
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.1e-15 86.7 67 67.2
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.8e-11 72.0 136 36.8
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.7e-10 70.9 173 33.5
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 7.3e-09 65.5 42 76.2
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.6e-08 63.2 34 82.4
Medtr3g063430 Medicago truncatula HOM05D001715 ORTHO05D259122 2.6e-06 57.0 55 52.7


User provided reference genes

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