Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 0.0e+00 1543.5 754 100.0
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.6e-279 966.1 770 63.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 4.2e-272 941.4 775 62.1
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.3e-269 931.8 772 61.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 9.7e-269 930.2 791 58.9
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 6.3e-268 927.5 768 60.0
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.1e-267 926.8 762 60.9
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 9.1e-267 923.7 767 59.7
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 5.9e-266 921.0 792 58.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.3e-265 919.8 792 58.6
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.9e-264 916.0 769 59.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 3.2e-264 915.2 778 59.6
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.2e-264 914.8 789 58.2
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 7.2e-264 914.1 774 60.3
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 9.4e-264 913.7 777 59.3
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 1.2e-263 913.3 781 58.1
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.0e-262 910.2 782 58.2
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.3e-262 909.1 770 59.0
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 6.7e-262 907.5 781 58.4
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 8.8e-262 907.1 734 60.8
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.2e-261 906.7 727 60.8
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.0e-261 906.0 829 56.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 5.7e-261 904.4 746 59.8
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 4.8e-260 901.4 733 61.4
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 4.1e-259 898.3 786 57.6
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.2e-258 896.7 788 57.4
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.0e-258 896.0 778 59.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 5.9e-258 894.4 785 57.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 7.7e-258 894.0 774 59.0
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.0e-257 893.6 748 60.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 6.5e-257 891.0 769 58.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.1e-256 890.2 784 57.9
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.4e-256 887.1 705 62.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.2e-255 886.7 764 58.9
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 8.0e-255 884.0 774 58.3
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.0e-254 883.6 781 56.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 3.0e-254 882.1 773 59.0
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 6.8e-254 880.9 735 59.5
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.2e-253 880.2 767 58.0
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.6e-253 879.0 780 57.1
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.3e-252 876.7 755 58.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.3e-252 876.7 759 58.5
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.7e-252 875.2 763 58.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 4.8e-252 874.8 774 58.8
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 1.1e-251 873.6 758 58.3
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.1e-251 873.6 780 57.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.1e-251 872.1 819 54.9
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.1e-251 871.7 747 58.4
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 3.5e-250 868.6 775 57.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.5e-250 868.2 770 58.4
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 7.7e-250 867.5 761 58.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.7e-249 866.3 778 58.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 3.8e-249 865.1 735 59.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 5.0e-249 864.8 759 58.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 8.6e-249 864.0 775 57.2
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.1e-248 863.6 777 58.4
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-248 863.2 781 56.7
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.9e-248 862.8 764 57.7
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.9e-248 862.8 715 60.6
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.5e-248 861.3 784 55.0
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 2.1e-247 859.4 767 56.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 4.7e-247 858.2 768 57.0
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 6.1e-247 857.8 775 57.0
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.0e-247 857.4 776 57.2
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.0e-247 857.4 771 57.5
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.4e-246 856.7 777 56.8
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.4e-246 856.7 754 57.0
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.8e-246 856.3 777 56.8
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 3.0e-246 855.5 759 58.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 4.0e-246 855.1 734 59.3
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 6.8e-246 854.4 776 56.4
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 6.8e-246 854.4 770 56.4
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.6e-245 852.4 761 57.4
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 2.8e-244 849.0 731 56.8
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.4e-243 846.7 724 58.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.8e-243 846.3 767 56.7
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.8e-243 846.3 754 57.3
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.4e-243 845.9 748 58.6
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 4.1e-243 845.1 783 55.8
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.4e-243 844.7 776 56.2
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 5.4e-243 844.7 723 58.0
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 7.0e-243 844.3 765 57.1
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.5e-242 842.0 773 53.7
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.5e-242 842.0 753 56.2
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.5e-242 841.6 786 54.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 7.8e-242 840.9 761 57.4
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 7.8e-242 840.9 762 57.1
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.3e-241 840.1 754 57.2
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.3e-241 840.1 784 54.3
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.3e-241 840.1 761 57.0
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 2.9e-241 839.0 777 54.6
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 5.0e-241 838.2 761 56.6
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.6e-241 837.4 771 54.9
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.1e-240 837.0 777 54.6
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.5e-240 836.6 777 54.4
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 1.9e-240 836.3 748 55.9
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 3.3e-240 835.5 763 56.7
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 5.6e-240 834.7 767 56.8
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 7.3e-240 834.3 762 56.7
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 9.5e-240 833.9 759 56.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.6e-239 833.2 768 56.9
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.8e-239 832.4 767 54.6
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 3.6e-239 832.0 828 53.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-238 829.3 765 56.5
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.0e-238 828.6 777 53.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 4.0e-238 828.6 751 55.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.0e-237 826.2 768 56.5
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.7e-236 823.2 778 53.3
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 6.4e-236 821.2 744 55.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.2e-235 818.9 753 55.1
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 4.1e-235 818.5 766 55.5
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.0e-234 816.2 765 54.8
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.0e-234 816.2 766 55.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.6e-234 815.1 776 53.4
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 6.0e-234 814.7 765 56.1
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.7e-233 813.1 729 56.5
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.3e-233 812.8 783 53.5
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 3.9e-233 812.0 772 55.2
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 6.6e-233 811.2 774 55.6
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.5e-232 810.1 778 55.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 4.3e-232 808.5 775 54.5
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.1e-231 806.2 716 56.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 6.2e-231 804.7 766 54.7
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-230 803.5 766 54.4
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.4e-229 798.9 708 59.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.4e-227 793.5 749 55.3
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.0e-226 788.1 720 56.0
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 3.0e-225 785.8 810 52.5
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.3e-224 782.3 790 52.9
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.2e-223 780.4 737 54.7
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 2.1e-223 779.6 779 53.4
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.8e-222 776.5 736 54.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.0e-222 775.4 409 93.4
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 2.4e-219 766.1 754 52.4
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.1e-216 757.3 703 56.5
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.2e-215 753.8 779 50.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 4.7e-215 751.9 762 52.6
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.9e-208 729.9 669 56.1
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 4.4e-205 718.8 786 48.7
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.1e-200 704.1 751 50.5
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.6e-200 701.0 573 61.3
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 5.3e-198 695.3 731 51.3
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 6.9e-198 694.9 735 50.5
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 7.7e-173 611.7 584 55.3
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.6e-154 550.8 671 46.9
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.7e-154 550.1 800 41.4
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 4.7e-146 522.7 758 39.3
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.3e-142 509.2 834 37.2
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.0e-137 495.0 829 36.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.2e-128 464.9 819 35.9
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.8e-121 441.0 633 40.8
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.4e-118 430.6 457 51.2
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.7e-116 424.5 344 62.5
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 9.8e-112 408.7 322 64.6
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.3e-99 367.1 301 61.1
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.9e-91 341.3 461 43.0
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.8e-89 334.7 320 52.5
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 3.3e-83 313.9 266 60.9
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.4e-63 246.1 576 31.8
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.4e-62 245.4 194 62.4
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 3.0e-60 237.7 156 72.4
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.1e-59 235.7 824 26.1
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 1.3e-58 232.3 256 52.7
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.7e-55 221.9 122 91.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.6e-53 214.2 204 52.5
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 3.3e-51 207.6 161 60.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 4.2e-46 190.7 202 53.0
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-45 189.1 119 75.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 3.9e-44 184.1 204 50.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 1.2e-37 162.5 211 46.9
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.7e-37 161.4 443 29.8
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.1e-37 160.2 109 71.6
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.0e-36 159.5 654 25.4
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.4e-35 154.1 104 72.1
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 3.1e-33 147.9 464 27.6
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 2.5e-30 138.3 102 64.7
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 1.5e-22 112.5 98 58.2
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 9.8e-19 99.8 113 44.2
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 2.3e-07 62.0 124 34.7
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 1.5e-06 59.3 166 23.5
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 1.5e-06 59.3 176 21.6
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 1.9e-06 58.9 195 22.6
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.9e-06 58.9 125 26.4
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.9e-06 58.9 125 27.2
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 4.3e-06 57.8 121 34.7
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 5.6e-06 57.4 123 26.8
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 7.3e-06 57.0 166 23.5
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 9.5e-06 56.6 166 21.1


User provided reference genes

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