Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 0.0e+00 1265.0 609 100.0
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 4.3e-283 977.6 658 72.8
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.4e-280 968.0 659 71.9
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 2.9e-279 964.9 659 71.8
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 3.3e-275 951.4 657 70.2
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 4.8e-274 947.6 658 70.7
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 4.4e-272 941.0 658 69.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.3e-271 939.5 657 69.3
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.7e-271 939.1 657 70.5
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 2.2e-271 938.7 658 69.3
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.4e-270 934.1 658 70.1
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 9.3e-270 933.3 658 69.3
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 9.3e-270 933.3 658 69.1
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.2e-269 932.9 657 69.7
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.2e-269 932.9 657 69.7
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.6e-269 932.6 659 69.0
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 2.1e-269 932.2 659 68.9
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 2.7e-269 931.8 658 69.1
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 2.7e-269 931.8 659 69.5
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.0e-268 929.9 657 70.2
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 1.0e-268 929.9 657 69.7
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.3e-268 929.5 659 70.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.3e-268 929.5 659 69.2
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.3e-268 928.7 659 69.5
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.3e-268 928.7 661 68.8
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 3.0e-268 928.3 659 69.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 5.1e-268 927.5 653 69.4
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 5.1e-268 927.5 622 72.7
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 5.1e-268 927.5 661 68.8
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 8.7e-268 926.8 658 69.3
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.5e-267 926.0 658 69.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.5e-267 925.2 658 69.6
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 3.3e-267 924.9 658 69.1
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 4.3e-267 924.5 673 66.9
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 7.3e-267 923.7 657 68.2
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.3e-266 922.9 657 68.8
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.3e-266 922.9 659 68.1
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 3.6e-266 921.4 658 69.0
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.6e-266 921.4 658 68.2
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 3.6e-266 921.4 659 69.3
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.4e-265 919.5 659 68.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-265 919.1 658 67.3
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 4.0e-265 917.9 660 68.0
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 4.0e-265 917.9 660 68.0
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 5.3e-265 917.5 660 68.0
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.0e-264 915.6 659 68.9
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 3.4e-264 914.8 660 68.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 7.6e-264 913.7 662 68.4
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.3e-263 912.9 658 67.8
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 8.4e-263 910.2 659 67.7
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 2.4e-262 908.7 658 67.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 3.2e-262 908.3 653 67.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 9.3e-262 906.7 671 66.6
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.6e-261 906.0 712 65.6
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.0e-260 903.3 659 67.2
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-259 899.8 659 66.6
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.5e-259 898.7 706 63.0
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 3.3e-259 898.3 660 66.7
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-259 898.3 659 67.5
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.3e-259 897.9 659 66.5
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 5.6e-259 897.5 659 67.2
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 5.6e-259 897.5 659 66.3
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 7.4e-259 897.1 659 66.9
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-258 896.3 659 66.5
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 6.2e-258 894.0 659 66.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.1e-258 893.6 659 65.9
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.1e-258 893.6 659 65.9
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 8.1e-258 893.6 659 66.3
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 8.1e-258 893.6 658 66.9
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.1e-257 893.3 660 65.9
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.4e-257 892.1 659 66.5
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-256 889.4 659 65.6
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.5e-256 889.4 659 66.9
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 3.4e-256 888.3 659 66.2
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.0e-255 886.7 659 65.7
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.3e-255 886.3 659 66.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.1e-253 879.0 660 65.9
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 7.9e-253 877.1 665 65.4
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.3e-252 875.5 659 65.3
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 3.0e-252 875.2 686 63.3
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 3.9e-252 874.8 657 67.1
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.5e-251 872.8 664 65.7
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.3e-250 869.8 683 64.7
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.1e-250 869.0 684 64.3
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 3.7e-250 868.2 639 67.8
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 4.8e-250 867.8 613 70.0
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.8e-249 865.9 665 65.1
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 2.4e-249 865.5 642 67.6
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 9.0e-249 863.6 707 61.7
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 3.4e-248 861.7 553 74.7
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.0e-247 860.1 669 64.9
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.4e-246 856.3 686 63.6
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 3.2e-246 855.1 680 63.8
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.2e-245 853.2 688 62.6
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.5e-245 851.7 660 65.6
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 8.2e-242 840.5 667 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.1e-238 830.1 672 62.1
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 1.9e-238 829.3 552 72.6
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.2e-238 828.6 688 60.5
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 7.4e-235 817.4 667 61.2
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.5e-232 809.7 673 58.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.2e-230 801.6 659 60.5
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.2e-230 800.8 662 61.8
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.2e-229 800.0 669 59.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.1e-228 794.7 667 59.8
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 2.6e-227 792.3 703 58.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.4e-225 786.6 673 60.9
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.2e-221 773.5 574 66.0
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.7e-221 772.3 574 66.2
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.5e-219 766.5 551 70.4
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.5e-219 766.5 652 60.3
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.4e-219 765.0 556 68.7
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 4.4e-219 765.0 788 52.4
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.8e-210 735.7 538 66.9
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.6e-205 719.9 660 56.2
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 5.6e-198 694.9 508 66.5
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.8e-196 689.9 669 53.8
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 5.7e-195 684.9 640 55.0
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.6e-192 676.8 475 69.3
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 6.8e-188 661.4 454 70.5
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.0e-175 619.4 511 61.8
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 2.8e-165 586.3 669 48.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.9e-162 576.2 670 47.0
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 2.1e-157 560.1 707 43.4
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.6e-157 559.3 651 48.2
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.4e-146 521.9 367 69.5
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.4e-145 520.0 643 44.0
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.4e-140 504.2 666 44.6
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.1e-140 503.1 519 51.8
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.9e-137 493.8 390 62.8
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.1e-132 478.0 337 69.4
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 9.0e-132 474.9 638 45.0
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.9e-129 467.2 672 41.4
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 2.6e-123 446.8 335 67.2
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 4.2e-113 412.9 320 64.4
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.5e-110 404.4 271 71.6
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.0e-103 381.7 273 67.0
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 2.0e-102 377.5 375 55.5
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.5e-97 359.4 342 57.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.7e-96 356.3 652 35.7
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 2.9e-90 337.0 239 67.8
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.9e-89 334.3 293 62.1
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.4e-76 290.8 659 32.2
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 3.3e-73 280.4 439 38.3
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.9e-66 256.9 312 46.2
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 4.3e-65 253.4 235 57.4
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 5.6e-65 253.1 582 32.8
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.6e-64 250.4 201 60.2
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.5e-62 245.0 654 28.6
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 4.1e-60 236.9 570 30.4
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 1.9e-52 211.5 551 32.8
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.0e-50 204.1 279 42.7
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.4e-44 185.3 139 71.2
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-39 169.1 145 63.4
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 8.4e-37 159.5 231 40.3
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.3e-34 151.4 227 40.5
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 5.6e-33 146.7 108 65.7
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.3e-32 145.6 112 67.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 2.4e-28 131.3 125 54.4
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.5e-25 122.1 65 84.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 7.4e-25 119.8 79 68.4
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 2.6e-22 111.3 60 73.3
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 3.4e-22 110.9 122 47.5
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 1.9e-20 105.1 63 68.3
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 1.6e-19 102.1 160 38.8
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 2.3e-18 98.2 92 56.5
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-15 89.4 50 80.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 3.8e-13 80.9 79 51.9
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 1.4e-12 79.0 63 66.7
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 5.5e-12 77.0 45 84.4
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 2.1e-11 75.1 50 64.0
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 6.1e-11 73.6 39 82.1
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.9e-10 70.9 48 66.7
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.1e-09 69.3 74 51.4
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 6.3e-08 63.5 48 52.1
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 1.8e-07 62.0 42 69.0
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 9.1e-07 59.7 47 59.6
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 1.5e-06 58.9 37 73.0
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.5e-06 58.9 42 64.3
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 3.4e-06 57.8 162 26.5
Lsat_1_v5_gn_8_57261 Lactuca sativa HOM05D000639 ORTHO05D005966 4.5e-06 57.4 133 30.8


User provided reference genes

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