Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0534 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 6.2e-213 743.8 362 100.0
CDE04G1135 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 7.7e-139 497.7 497 58.6
Actinidia07321 Actinidia chinensis HOM05D003107 ORTHO05D003092 1.8e-26 124.4 374 29.9
Sc18g0000310 Simmondsia chinensis HOM05D003107 ORTHO05D003092 8.3e-24 115.5 411 28.0
Hma1.2p1_0497F.1_g166410 Hydrangea macrophylla HOM05D003107 ORTHO05D003092 1.2e-22 111.7 304 32.9
vmacro07728 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 6.1e-19 99.4 415 28.0
Rhsim01G0061100 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.4e-18 98.2 369 26.3
Thecc.09G133300 Theobroma cacao HOM05D003107 ORTHO05D003092 3.0e-18 97.1 529 27.0
Gohir.A06G053600 Gossypium hirsutum HOM05D003107 ORTHO05D003092 2.0e-17 94.4 385 26.5
AUR62011180 Chenopodium quinoa HOM05D003107 ORTHO05D003092 2.6e-17 94.0 459 25.3
AUR62013303 Chenopodium quinoa HOM05D003107 ORTHO05D003092 3.4e-17 93.6 283 28.3
HanXRQChr12g0356791 Helianthus annuus HOM05D003107 ORTHO05D003092 9.8e-17 92.0 285 28.4
Lsat_1_v5_gn_5_93901 Lactuca sativa HOM05D003107 ORTHO05D003092 2.2e-16 90.9 302 28.1
ATR0800G121 Amborella trichopoda HOM05D003107 ORTHO05D003092 8.3e-16 89.0 471 24.2
Ah.09g224690 Amaranthus hybridus HOM05D009561 ORTHO05D003092 1.4e-15 88.2 289 26.6
CiPaw.03G248900 Carya illinoinensis HOM05D003107 ORTHO05D003092 1.4e-15 88.2 96 51.0
Dinv41472 Davidia involucrata HOM05D003107 ORTHO05D003092 1.8e-15 87.8 97 49.5
HPP92_010519 Vanilla planifolia HOM05D003107 ORTHO05D003092 1.8e-15 87.8 97 49.5
CSS0015137 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 2.4e-15 87.4 330 28.8
ECA234G1222 Erigeron canadensis HOM05D003107 ORTHO05D003092 2.4e-15 87.4 333 26.1
QL02p089967 Quercus lobata HOM05D003107 ORTHO05D003092 2.4e-15 87.4 225 32.4
Potri.018G125500 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.1e-15 87.0 96 47.9
Potri.T125307 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.1e-15 87.0 96 47.9
Sabra18G0106800 Salix brachista HOM05D003107 ORTHO05D003092 7.0e-15 85.9 96 47.9
CSS0017448 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 1.2e-14 85.1 350 27.1
Duzib187G1951 Durio zibethinus HOM05D003107 ORTHO05D003092 1.2e-14 85.1 96 47.9
Nn8g39562 Nelumbo nucifera HOM05D003107 ORTHO05D003092 1.2e-14 85.1 97 50.5
CAN.G763.8 Capsicum annuum HOM05D009561 ORTHO05D003092 1.6e-14 84.7 531 25.2
TAR636G3294 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.6e-14 84.7 97 49.5
Cpa.g.sc46.47 Carica papaya HOM05D003107 ORTHO05D003092 2.7e-14 84.0 96 46.9
Gohir.D06G052900 Gossypium hirsutum HOM05D003107 ORTHO05D003092 2.7e-14 84.0 96 47.9
Manes.06G046500 Manihot esculenta HOM05D003107 ORTHO05D003092 2.7e-14 84.0 96 46.9
Cfa002924 Carpinus fangiana HOM05D003107 ORTHO05D003092 1.3e-13 81.6 256 26.6
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 1.7e-13 81.3 304 26.3
Gorai.010G061400 Gossypium raimondii HOM05D003107 ORTHO05D003092 5.0e-13 79.7 284 27.5
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 8.6e-13 79.0 345 25.5
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 8.6e-13 79.0 300 25.0
CiPaw.08G015500 Carya illinoinensis HOM05D003107 ORTHO05D003092 1.5e-12 78.2 353 22.9
Ca_15699_v3 Cicer arietinum L. HOM05D003107 ORTHO05D003092 1.5e-12 78.2 352 25.0
Lalb_Chr08g0234601 Lupinus albus HOM05D003107 ORTHO05D003092 1.5e-12 78.2 99 42.4
Nitab4.5_0003393g0030 Nicotiana tabacum HOM05D009561 ORTHO05D003092 5.6e-12 76.3 404 26.0
Os04g0644675 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 5.6e-12 76.3 96 42.7
Aqoxy7G03629 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 7.3e-12 75.9 96 46.9
Medtr3g108010 Medicago truncatula HOM05D003107 ORTHO05D003092 1.2e-11 75.1 351 23.4
Peaxi162Scf00088g01215 Petunia axillaris HOM05D009561 ORTHO05D003092 2.8e-11 73.9 452 26.1
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 3.6e-11 73.6 299 24.4
Ciclev10007677m.g Citrus clementina HOM05D003107 ORTHO05D003092 6.1e-11 72.8 96 42.7
AUR62032378 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.0e-10 72.0 388 24.5
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 2.3e-10 70.9 308 24.7
HanXRQChr03g0078061 Helianthus annuus HOM05D003107 ORTHO05D003092 5.2e-10 69.7 305 23.0
ATR0037G033 Amborella trichopoda HOM05D003107 ORTHO05D003092 8.9e-10 68.9 363 24.2
QL12p031313 Quercus lobata HOM05D003107 ORTHO05D003092 8.9e-10 68.9 364 21.7
CsaV3_3G046670 Cucumis sativus L. HOM05D003107 ORTHO05D003092 1.2e-09 68.6 360 23.6
Psat5g027640 Pisum sativum HOM05D003107 ORTHO05D003092 1.2e-09 68.6 358 22.3
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 1.5e-09 68.2 421 22.6
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 1.5e-09 68.2 337 24.6
Sabra18G0035100 Salix brachista HOM05D003107 ORTHO05D003092 1.5e-09 68.2 346 27.5
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 1.5e-09 68.2 305 23.6
ClCG05G017190 Citrullus lanatus HOM05D003107 ORTHO05D003092 2.0e-09 67.8 290 27.2
Lalb_Chr08g0243801 Lupinus albus HOM05D003107 ORTHO05D003092 2.6e-09 67.4 356 24.4
AUR62024841 Chenopodium quinoa HOM05D003107 ORTHO05D003092 3.4e-09 67.0 401 23.4
Atru.chr7.2327 Acer truncatum HOM05D003107 ORTHO05D003092 4.4e-09 66.6 331 23.9
C09p65430 Brassica napus HOM05D003107 ORTHO05D003092 5.8e-09 66.2 297 28.6
Haze_25496 Corylus avellana HOM05D009561 ORTHO05D003092 7.5e-09 65.9 201 29.4
Solyc08g067790.4 Solanum lycopersicum HOM05D003107 ORTHO05D003092 7.5e-09 65.9 323 24.1
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 9.8e-09 65.5 93 35.5
Sopen08g021720 Solanum pennellii HOM05D003107 ORTHO05D003092 9.8e-09 65.5 323 23.5
Glyma.06G073200 Glycine max HOM05D003107 ORTHO05D003092 1.3e-08 65.1 294 20.7
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 1.3e-08 65.1 325 25.2
Phvul.009G097700 Phaseolus vulgaris HOM05D003107 ORTHO05D003092 1.3e-08 65.1 296 22.3
DCAR_023265 Daucus carota HOM05D003107 ORTHO05D003092 2.2e-08 64.3 322 23.6
TPR.G34688 Trifolium pratense HOM05D003107 ORTHO05D003092 2.2e-08 64.3 353 21.8
Actinidia15709 Actinidia chinensis HOM05D003107 ORTHO05D003092 2.9e-08 63.9 99 34.3
MSTRG.14000 Avicennia marina HOM05D003107 ORTHO05D003092 4.9e-08 63.2 218 25.7
Glyma.04G071900 Glycine max HOM05D003107 ORTHO05D003092 4.9e-08 63.2 306 23.5
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 4.9e-08 63.2 316 21.2
ECA240G4010 Erigeron canadensis HOM05D003107 ORTHO05D003092 6.4e-08 62.8 309 22.0
A10p26320 Brassica napus HOM05D003107 ORTHO05D003092 8.3e-08 62.4 302 26.8
BraA10t44689Z Brassica rapa HOM05D003107 ORTHO05D003092 8.3e-08 62.4 302 26.8
COL.COLO4_24054 Corchorus olitorius HOM05D003107 ORTHO05D003092 8.3e-08 62.4 319 23.8
Lj6g0021163 Lotus japonicus HOM05D003107 ORTHO05D003092 8.3e-08 62.4 174 27.6
SalBow8G1653 Salvia bowleyana HOM05D003107 ORTHO05D003092 8.3e-08 62.4 348 22.4
Carub.0006s2338 Capsella rubella HOM05D003107 ORTHO05D003092 1.1e-07 62.0 303 24.4
CAN.G21.2 Capsicum annuum HOM05D003107 ORTHO05D003092 1.1e-07 62.0 342 24.9
Haze_21621 Corylus avellana HOM05D003107 ORTHO05D003092 1.1e-07 62.0 345 22.6
Duzib150G0475 Durio zibethinus HOM05D003107 ORTHO05D003092 1.1e-07 62.0 301 23.6
Migut.A00276 Erythranthe guttata HOM05D003107 ORTHO05D003092 1.1e-07 62.0 318 21.7
SalBow8G2039 Salvia bowleyana HOM05D003107 ORTHO05D003092 1.1e-07 62.0 347 23.1
CDE06G1195 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 1.4e-07 61.6 317 24.6
BcaB08g37060 Brassica carinata HOM05D003107 ORTHO05D003092 1.9e-07 61.2 309 25.6
A06p36230 Brassica napus HOM05D003107 ORTHO05D003092 1.9e-07 61.2 91 36.3
C07p42300 Brassica napus HOM05D003107 ORTHO05D003092 1.9e-07 61.2 308 23.7
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 1.9e-07 61.2 396 22.2
TAR624G0993 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.9e-07 61.2 306 24.5
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 1.9e-07 61.2 308 22.4
Nitab4.5_0000374g0120 Nicotiana tabacum HOM05D009561 ORTHO05D003092 2.4e-07 60.8 432 24.3
SHI33553 Sapria himalayana HOM05D014003 ORTHO05D016381 2.4e-07 60.8 38 71.1
Manes.03G065000 Manihot esculenta HOM05D003107 ORTHO05D003092 3.2e-07 60.5 407 20.6
Nitab4.5_0000125g0300 Nicotiana tabacum HOM05D003107 ORTHO05D003092 3.2e-07 60.5 328 23.5
Nitab4.5_0006579g0010 Nicotiana tabacum HOM05D003107 ORTHO05D003092 3.2e-07 60.5 309 23.3
Potri.006G246800 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.2e-07 60.5 307 24.1
Potri.018G034500 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.2e-07 60.5 316 25.6
PGSC0003DMG400033626 Solanum tuberosum HOM05D003107 ORTHO05D003092 3.2e-07 60.5 330 23.0
AagrBONN_evm.TU.Sc2ySwM_344.4237 Anthoceros agrestis HOM05D003107 ORTHO05D003092 4.1e-07 60.1 100 34.0
Cfa013207 Carpinus fangiana HOM05D003107 ORTHO05D003092 4.1e-07 60.1 328 22.6
Sed0020655 Sechium edule HOM05D003107 ORTHO05D003092 4.1e-07 60.1 329 24.6
FAN20G1668 Fragaria x ananassa HOM05D003107 ORTHO05D003092 5.4e-07 59.7 349 23.8
Peaxi162Scf00105g01432 Petunia axillaris HOM05D003107 ORTHO05D003092 5.4e-07 59.7 316 25.0
arahy.Tifrunner.gnm1.ann1.8TMD5Z Arachis hypogaea HOM05D003107 ORTHO05D003092 7.0e-07 59.3 310 23.5
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 9.2e-07 58.9 304 23.7
PSO017G1142 Papaver somniferum HOM05D003107 ORTHO05D003092 9.2e-07 58.9 402 21.6
Thecc.09G144400 Theobroma cacao HOM05D003107 ORTHO05D003092 9.2e-07 58.9 309 24.9
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 9.2e-07 58.9 390 23.1
BcaC04g19228 Brassica carinata HOM05D003107 ORTHO05D003092 1.2e-06 58.5 298 26.5
BraA06t26545Z Brassica rapa HOM05D003107 ORTHO05D003092 1.2e-06 58.5 315 24.8
TWI32G0172 Tripterygium wilfordii HOM05D003107 ORTHO05D003092 1.2e-06 58.5 305 23.6
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 1.2e-06 58.5 315 22.9
AL4G17160 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 2.0e-06 57.8 254 25.6
Thhalv10012648m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 2.0e-06 57.8 213 27.2
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 2.0e-06 57.8 91 34.1
Oeu014658.2 Olea europaea HOM05D003107 ORTHO05D003092 2.0e-06 57.8 98 29.6
SHI25697 Sapria himalayana HOM05D009561 ORTHO05D003092 2.0e-06 57.8 36 72.2
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 2.7e-06 57.4 381 22.0
AT5G11430 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 3.5e-06 57.0 202 26.2
Eucgr.C01815 Eucalyptus grandis HOM05D003107 ORTHO05D003092 3.5e-06 57.0 302 22.8
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 3.5e-06 57.0 334 21.0
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 3.5e-06 57.0 320 23.1
FAN24G3197 Fragaria x ananassa HOM05D003107 ORTHO05D003092 4.6e-06 56.6 93 32.3
Lalb_Chr11g0063981 Lupinus albus HOM05D003107 ORTHO05D003092 4.6e-06 56.6 387 22.2
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 4.6e-06 56.6 95 31.6
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 4.6e-06 56.6 92 33.7
THA.LOC104819888 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 4.6e-06 56.6 299 23.7
AL6G37320 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 6.0e-06 56.2 327 23.9
CARHR201800 Cardamine hirsuta HOM05D003107 ORTHO05D003092 6.0e-06 56.2 202 26.2
FvH4_2g30140 Fragaria vesca HOM05D003107 ORTHO05D003092 6.0e-06 56.2 93 32.3
FAN15G0271 Fragaria x ananassa HOM05D003107 ORTHO05D003092 6.0e-06 56.2 93 32.3
Gohir.D08G257700 Gossypium hirsutum HOM05D003107 ORTHO05D003092 6.0e-06 56.2 301 23.3
Psat1g024000 Pisum sativum HOM05D003107 ORTHO05D003092 6.0e-06 56.2 85 36.5
GSVIVG01015600001 Vitis vinifera HOM05D009561 ORTHO05D003092 6.0e-06 56.2 241 27.4
Gorai.004G274700 Gossypium raimondii HOM05D003107 ORTHO05D003092 7.8e-06 55.8 202 25.2
Prupe.7G018800 Prunus persica HOM05D003107 ORTHO05D003092 7.8e-06 55.8 357 23.0
Sc09g0008850 Simmondsia chinensis HOM05D003107 ORTHO05D003092 7.8e-06 55.8 201 25.9


User provided reference genes

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