Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.6e-74 282.0 141 100.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 5.1e-46 188.0 124 76.6
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.1e-45 186.8 124 77.4
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.5e-45 186.4 124 75.0
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.5e-45 185.7 124 76.6
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.5e-45 185.7 123 75.6
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.6e-45 184.5 125 74.4
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 7.4e-45 184.1 123 74.0
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 7.4e-45 184.1 125 74.4
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.6e-45 183.7 124 74.2
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.6e-45 183.7 124 74.2
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.3e-44 183.3 121 80.2
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 2.1e-44 182.6 123 74.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 2.1e-44 182.6 119 76.5
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.1e-44 182.6 125 73.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.1e-44 182.6 125 73.6
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.1e-44 182.6 121 75.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.1e-44 182.6 125 74.4
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.1e-44 182.6 124 74.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.8e-44 182.2 121 75.2
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.7e-44 181.8 124 74.2
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 3.7e-44 181.8 121 75.2
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 3.7e-44 181.8 121 75.2
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 3.7e-44 181.8 125 72.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.8e-44 181.4 123 74.8
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.8e-44 181.4 129 70.5
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 4.8e-44 181.4 125 76.8
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.2e-44 181.0 135 68.9
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.2e-44 181.0 135 68.9
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 6.2e-44 181.0 117 77.8
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 8.1e-44 180.6 122 74.6
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.1e-43 180.3 129 69.8
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.4e-43 179.9 124 72.6
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-43 179.5 123 73.2
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.8e-43 179.5 125 71.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.4e-43 179.1 123 74.0
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.4e-43 179.1 124 71.0
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.4e-43 179.1 125 72.0
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 3.1e-43 178.7 121 74.4
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 3.1e-43 178.7 125 72.8
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 4.0e-43 178.3 124 72.6
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 4.0e-43 178.3 122 73.0
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 4.0e-43 178.3 125 72.0
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 4.0e-43 178.3 124 72.6
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 4.0e-43 178.3 124 71.8
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 5.3e-43 177.9 124 72.6
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 5.3e-43 177.9 121 74.4
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 5.3e-43 177.9 126 73.0
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 6.9e-43 177.6 125 71.2
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 6.9e-43 177.6 125 71.2
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 9.0e-43 177.2 129 72.1
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 9.0e-43 177.2 122 74.6
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 9.0e-43 177.2 123 73.2
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.2e-42 176.8 125 70.4
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.2e-42 176.8 125 70.4
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.2e-42 176.8 125 70.4
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.5e-42 176.4 124 72.6
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.5e-42 176.4 121 72.7
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.5e-42 176.4 125 71.2
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.5e-42 176.4 121 73.6
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.0e-42 176.0 124 71.8
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.0e-42 176.0 127 70.9
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.0e-42 176.0 121 73.6
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.6e-42 175.6 125 71.2
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.6e-42 175.6 125 72.8
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.6e-42 175.6 126 73.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.6e-42 175.6 123 73.2
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.6e-42 175.6 123 73.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.4e-42 175.3 122 73.8
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.4e-42 175.3 129 72.1
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.4e-42 175.3 119 73.9
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.8e-42 174.5 126 70.6
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 5.8e-42 174.5 122 73.0
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 5.8e-42 174.5 117 73.5
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 7.6e-42 174.1 117 72.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 7.6e-42 174.1 125 70.4
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 7.6e-42 174.1 118 76.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.0e-41 173.7 123 72.4
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.0e-41 173.7 123 72.4
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.0e-41 173.7 121 70.2
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.0e-41 173.7 126 69.8
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.0e-41 173.7 126 69.8
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.0e-41 173.7 121 72.7
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-41 173.3 125 70.4
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-41 173.3 125 70.4
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.3e-41 173.3 122 73.8
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.7e-41 172.9 125 69.6
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.2e-41 172.6 123 70.7
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.9e-41 172.2 124 71.8
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 3.8e-41 171.8 121 72.7
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 4.9e-41 171.4 124 72.6
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 6.5e-41 171.0 123 70.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 8.4e-41 170.6 118 73.7
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 3.2e-40 168.7 125 69.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 3.2e-40 168.7 126 69.8
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 9.3e-40 167.2 121 71.1
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.2e-39 166.8 125 69.6
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.2e-39 166.8 121 70.2
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.6e-39 166.4 125 68.8
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 6.0e-39 164.5 137 65.7
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.3e-38 163.3 125 68.0
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.3e-38 163.3 131 68.7
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.3e-38 162.5 135 62.2
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 3.9e-38 161.8 117 70.1
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 6.7e-38 161.0 116 70.7
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 6.7e-38 161.0 125 67.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.9e-37 159.5 117 70.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.6e-36 156.4 118 69.5
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.4e-35 152.5 119 64.7
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 5.3e-35 151.4 137 62.0
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.5e-34 148.3 122 62.3
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.3e-33 146.7 123 61.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.6e-31 139.8 125 59.2
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.6e-31 138.3 87 79.3
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 7.9e-31 137.5 128 54.7
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-30 136.7 87 78.2
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.3e-30 136.0 81 81.5
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.4e-26 122.1 132 54.5
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.9e-26 121.3 80 77.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 2.6e-21 105.9 96 59.4
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 7.7e-18 94.4 55 83.6
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.7e-18 94.4 92 60.9
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.7e-17 93.2 104 52.9
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 7.7e-10 67.8 47 68.1
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.5e-08 62.8 78 42.3
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.5e-08 62.8 78 42.3


User provided reference genes

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