Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 0.0e+00 1288.5 888 100.0
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 4.0e-253 878.6 888 69.4
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 1.5e-247 860.1 838 73.2
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 1.4e-237 827.0 888 70.7
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 5.2e-237 825.1 888 69.6
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 2.0e-233 813.1 901 65.1
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 1.9e-231 806.6 886 67.0
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 3.6e-230 802.4 888 66.9
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 4.7e-230 802.0 888 67.9
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 3.4e-228 795.8 888 68.6
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 3.4e-228 795.8 896 66.7
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 4.9e-227 792.0 887 67.1
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 1.8e-226 790.0 892 65.7
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 3.2e-226 789.3 889 65.8
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 1.7e-224 783.5 899 69.1
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 7.3e-223 778.1 883 68.1
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 2.8e-222 776.2 856 66.6
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 4.7e-222 775.4 814 68.8
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 6.8e-221 771.5 871 67.6
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 1.5e-220 770.4 873 67.7
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 2.0e-220 770.0 815 70.3
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 1.7e-219 766.9 888 68.4
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 2.9e-219 766.1 874 68.6
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 8.3e-219 764.6 871 67.2
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 2.4e-218 763.1 893 64.2
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 2.4e-218 763.1 882 68.7
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 4.1e-218 762.3 971 52.4
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 7.8e-217 758.1 814 67.1
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 3.0e-216 756.1 902 64.0
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 3.9e-216 755.7 902 62.7
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 8.6e-216 754.6 916 63.3
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 1.9e-215 753.4 934 61.6
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 5.6e-215 751.9 878 63.0
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 9.5e-215 751.1 858 64.6
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 1.2e-214 750.7 882 62.6
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 2.8e-214 749.6 893 62.9
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.1e-213 747.7 896 54.9
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 1.1e-213 747.7 895 64.5
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 1.8e-213 746.9 890 64.7
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 8.9e-213 744.6 888 63.0
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 3.4e-212 742.7 886 69.1
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 5.8e-212 741.9 825 70.9
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 2.2e-211 740.0 884 64.3
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 8.3e-211 738.0 884 64.4
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 4.1e-210 735.7 871 66.4
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 7.1e-210 734.9 879 61.9
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 7.1e-210 734.9 830 71.6
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 3.5e-209 732.6 881 62.0
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 1.0e-208 731.1 890 66.5
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 3.9e-208 729.2 879 62.3
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 3.9e-208 729.2 878 63.1
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 5.1e-208 728.8 876 63.0
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 6.6e-208 728.4 876 63.0
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 8.6e-208 728.0 909 62.4
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 1.1e-207 727.6 890 64.0
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 1.1e-207 727.6 884 61.8
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 1.9e-207 726.9 877 61.8
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 4.3e-207 725.7 873 66.7
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 5.6e-207 725.3 881 62.9
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 2.8e-206 723.0 876 62.8
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 4.7e-206 722.2 880 61.4
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 1.4e-205 720.7 879 61.3
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 3.1e-205 719.5 826 64.3
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 3.1e-205 719.5 826 64.3
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 4.0e-205 719.2 930 60.9
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.2e-204 717.6 818 64.7
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 2.6e-204 716.5 884 61.0
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 2.6e-204 716.5 826 63.8
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 3.4e-204 716.1 904 59.5
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 5.8e-204 715.3 876 61.1
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 1.1e-202 711.1 876 62.1
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 1.1e-202 711.1 876 62.1
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 2.4e-202 709.9 905 66.5
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 3.2e-202 709.5 816 65.1
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 3.2e-202 709.5 907 65.0
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 1.6e-201 707.2 907 64.5
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 2.7e-201 706.4 825 69.3
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 4.6e-201 705.7 823 63.5
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 6.0e-201 705.3 785 68.0
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.0e-200 704.5 867 49.7
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 2.3e-200 703.4 874 63.7
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.9e-199 700.3 871 64.4
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 3.1e-197 693.0 886 66.1
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 6.9e-197 691.8 885 60.6
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 1.2e-196 691.0 773 69.9
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 5.8e-196 688.7 853 62.4
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 1.3e-195 687.6 927 61.2
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 1.7e-195 687.2 882 66.6
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 5.4e-194 682.2 819 64.3
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 3.0e-192 676.4 999 45.8
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.9e-192 676.0 853 59.7
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 8.7e-192 674.9 883 61.5
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 6.4e-187 658.7 883 63.9
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 2.1e-185 653.7 826 47.9
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 3.5e-185 652.9 870 57.9
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 3.7e-182 642.9 900 57.1
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.4e-180 636.3 853 63.4
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 2.9e-171 606.7 679 65.7
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 3.8e-171 606.3 690 64.6
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 4.1e-165 586.3 715 66.2
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 1.3e-163 581.3 674 63.6
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 8.5e-163 578.6 664 63.4
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 4.6e-161 572.8 819 59.8
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 1.8e-157 560.8 534 66.1
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 7.7e-156 555.4 599 71.8
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 2.3e-152 543.9 542 58.9
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 4.5e-148 529.6 871 52.9
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 4.7e-145 519.6 819 53.4
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 8.0e-145 518.8 576 69.1
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 3.0e-144 516.9 548 62.4
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 4.4e-143 513.1 824 59.0
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 2.2e-139 500.7 455 62.6
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.3e-126 458.4 457 58.9
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.2e-119 435.3 534 46.4
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 1.4e-117 428.3 843 39.0
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 1.2e-100 372.1 432 54.9
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 4.4e-79 300.4 922 37.9
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 4.0e-64 250.8 283 67.1
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 7.9e-60 236.5 334 72.5
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 3.0e-59 234.6 226 54.9
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 7.4e-58 229.9 188 61.2
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 2.4e-56 224.9 198 57.1
ECA236G3818 Erigeron canadensis HOM05D004758 ORTHO05D006063 1.8e-48 198.7 307 39.4
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 1.5e-47 195.7 158 58.9
FAN06G1039 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.8e-46 191.0 189 49.2
PGSC0003DMG400013158 Solanum tuberosum HOM05D004758 ORTHO05D006063 9.4e-45 186.4 378 34.4
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 1.5e-42 179.1 217 69.1
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 4.8e-41 174.1 885 35.9
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 2.2e-38 165.2 217 61.3
Actinidia34322 Actinidia chinensis HOM05D004758 ORTHO05D006063 5.5e-37 160.6 131 55.7
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 7.2e-37 160.2 210 62.4
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 2.3e-35 155.2 125 59.2
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 5.7e-34 150.6 767 34.2
HanXRQChr12g0362941 Helianthus annuus HOM05D004758 ORTHO05D006063 3.7e-33 147.9 134 55.2
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 8.2e-33 146.7 99 66.7
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 5.3e-32 144.1 705 23.0
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 5.9e-31 140.6 99 63.6
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 1.7e-30 139.0 97 64.9
FAN01G1276 Fragaria x ananassa HOM05D004758 ORTHO05D006063 9.4e-29 133.3 103 58.3
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 8.8e-27 126.7 85 71.8
PGSC0003DMG401003900 Solanum tuberosum HOM05D004758 ORTHO05D006063 1.3e-22 112.8 92 62.0
Aa31sc12G110 Aethionema arabicum HOM05D004758 ORTHO05D006063 8.5e-22 110.2 164 42.7
FAN01G2473 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.5e-21 108.6 84 54.8
Lj3A886T35 Lonicera japonica HOM05D004758 ORTHO05D006063 1.6e-15 89.4 60 66.7
HPP92_020701 Vanilla planifolia HOM05D004758 ORTHO05D006063 8.5e-14 83.6 67 58.2
Ca_21928_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 5.5e-13 80.9 99 48.5
HanXRQChr15g0491701 Helianthus annuus HOM05D004758 ORTHO05D006063 2.1e-12 79.0 51 64.7
Psat0s3292g0040 Pisum sativum HOM05D000344 ORTHO05D001967 1.2e-07 63.2 41 65.9
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 2.7e-07 62.0 43 62.8
Cpa.g.sc43.119 Carica papaya HOM05D004758 ORTHO05D006063 1.0e-06 60.1 43 60.5
Gohir.A02G122100 Gossypium hirsutum HOM05D001315 ORTHO05D001618 8.6e-06 57.0 99 29.3


User provided reference genes

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