Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 3.7e-82 308.1 156 100.0
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 4.1e-20 102.1 86 61.6
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.7e-18 96.7 82 63.4
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 1.1e-17 94.0 81 58.0
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 1.1e-17 94.0 91 56.0
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 1.9e-17 93.2 84 56.0
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 5.5e-17 91.7 90 55.6
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 7.2e-17 91.3 92 53.3
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 1.6e-16 90.1 89 52.8
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 1.6e-16 90.1 89 53.9
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 2.1e-16 89.7 89 53.9
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 2.1e-16 89.7 89 52.8
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 2.7e-16 89.4 84 54.8
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 3.6e-16 89.0 84 54.8
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 4.7e-16 88.6 90 54.4
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 6.1e-16 88.2 89 51.7
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 8.0e-16 87.8 92 48.9
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 1.4e-15 87.0 89 53.9
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 1.4e-15 87.0 89 53.9
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 1.4e-15 87.0 92 50.0
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 1.8e-15 86.7 139 41.0
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 3.0e-15 85.9 137 42.3
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 3.9e-15 85.5 89 50.6
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 3.9e-15 85.5 89 51.7
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 6.7e-15 84.7 106 46.2
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 1.1e-14 84.0 75 57.3
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 1.5e-14 83.6 81 54.3
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 2.6e-14 82.8 85 50.6
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 4.4e-14 82.0 89 48.3
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 4.4e-14 82.0 152 34.2
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 4.4e-14 82.0 87 51.7
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 7.4e-14 81.3 89 49.4
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 9.7e-14 80.9 89 47.2
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 1.3e-13 80.5 88 50.0
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 1.7e-13 80.1 84 48.8
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 1.7e-13 80.1 84 48.8
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 1.7e-13 80.1 89 44.9
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 1.7e-13 80.1 89 49.4
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 1.7e-13 80.1 92 46.7
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 2.2e-13 79.7 89 47.2
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 2.8e-13 79.3 90 48.9
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 3.7e-13 79.0 89 48.3
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 3.7e-13 79.0 84 45.2
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 4.8e-13 78.6 89 47.2
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 4.8e-13 78.6 91 45.1
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 6.3e-13 78.2 88 46.6
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 6.3e-13 78.2 88 46.6
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 8.2e-13 77.8 89 46.1
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 8.2e-13 77.8 94 44.7
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.4e-12 77.0 89 44.9
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 1.8e-12 76.6 91 44.0
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 1.8e-12 76.6 91 44.0
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 3.1e-12 75.9 89 47.2
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 4.1e-12 75.5 89 46.1
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 5.3e-12 75.1 85 48.2
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 7.0e-12 74.7 104 41.3
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 9.1e-12 74.3 70 52.9
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 2.0e-11 73.2 93 43.0
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 2.0e-11 73.2 107 44.9
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 2.0e-11 73.2 116 41.4
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 2.6e-11 72.8 91 50.5
TAR374G1125 Trochodendron aralioides HOM05D006564 ORTHO05D007772 2.6e-11 72.8 89 49.4
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 3.5e-11 72.4 91 46.2
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 3.5e-11 72.4 84 46.4
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 3.5e-11 72.4 82 46.3
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 5.9e-11 71.6 79 48.1
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 5.9e-11 71.6 81 50.6
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 5.9e-11 71.6 88 44.3
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 5.9e-11 71.6 81 49.4
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 7.7e-11 71.2 94 42.6
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 7.7e-11 71.2 81 48.1
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 7.7e-11 71.2 81 48.1
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.0e-10 70.9 91 49.5
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.3e-10 70.5 85 47.1
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.7e-10 70.1 90 45.6
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 2.2e-10 69.7 93 41.9
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 2.2e-10 69.7 66 53.0
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 2.2e-10 69.7 87 46.0
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 2.9e-10 69.3 83 45.8
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 2.9e-10 69.3 83 49.4
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 3.8e-10 68.9 96 41.7
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 5.0e-10 68.6 84 46.4
ClCG08G018020 Citrullus lanatus HOM05D006564 ORTHO05D007772 3.2e-09 65.9 89 39.3
SEGI_36736 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 9.4e-09 64.3 67 43.3
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 1.6e-08 63.5 51 58.8
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 5.2e-07 58.5 135 30.4
Actinidia01700 Actinidia chinensis HOM05D006564 ORTHO05D007772 1.2e-06 57.4 53 54.7
CBR_g8804 Chara braunii HOM05D006564 ORTHO05D007772 1.5e-06 57.0 67 35.8
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 4.4e-06 55.5 53 49.1
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 7.5e-06 54.7 56 41.1
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 9.7e-06 54.3 105 29.5


User provided reference genes

Program Settings