Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 0.0e+00 1854.7 950 100.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 4.1e-240 835.5 987 50.8
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 4.4e-234 815.5 1016 48.7
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 5.2e-219 765.4 974 47.9
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 2.0e-210 736.9 1039 45.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.0e-194 683.7 987 45.7
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 7.6e-194 681.8 1007 44.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.2e-191 674.5 1012 43.6
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.6e-191 674.1 969 44.3
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.7e-190 670.6 967 44.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.4e-187 661.0 1014 43.5
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.8e-187 660.6 961 44.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 2.4e-187 660.2 978 44.0
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 5.8e-186 655.6 966 43.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.8e-186 655.6 979 43.2
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 9.9e-186 654.8 957 44.0
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.9e-185 652.5 961 44.8
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.7e-183 646.7 1049 43.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 7.9e-183 645.2 963 43.7
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.1e-181 641.3 962 43.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.9e-181 640.6 977 43.2
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 2.5e-181 640.2 977 42.3
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 3.3e-181 639.8 962 43.3
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 3.3e-181 639.8 982 43.7
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 4.3e-181 639.4 797 49.3
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-180 637.5 959 42.4
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.4e-179 634.4 962 43.2
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 5.3e-179 632.5 979 42.9
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 5.3e-179 632.5 992 41.8
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.9e-176 624.0 961 43.5
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.2e-175 621.3 966 41.8
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.6e-175 620.9 972 41.8
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.1e-175 620.5 1012 41.8
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 6.0e-175 619.0 1005 41.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.8e-174 617.5 876 46.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.6e-172 610.9 956 43.0
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.8e-172 610.1 1001 40.7
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.4e-171 607.8 970 41.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 5.3e-171 605.9 963 42.9
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.5e-170 602.8 1006 40.5
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.8e-170 602.4 958 44.1
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.8e-169 599.7 1002 40.5
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 6.5e-169 599.0 984 41.1
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-168 597.8 895 43.7
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.5e-168 597.0 964 41.5
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.2e-167 594.7 965 42.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.6e-167 594.3 999 40.3
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 2.1e-167 594.0 947 42.1
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.8e-166 590.9 966 41.9
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.3e-166 590.5 950 43.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.0e-166 590.1 1002 40.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 3.9e-166 589.7 951 41.6
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.9e-166 589.7 1025 39.9
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 5.1e-166 589.3 976 40.1
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 6.7e-166 589.0 971 39.9
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.3e-165 586.6 965 41.5
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.6e-164 584.3 870 45.3
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.8e-163 580.9 983 41.4
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 9.0e-163 578.6 969 39.2
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.6e-162 577.0 957 40.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 5.9e-162 575.9 963 41.8
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.7e-161 574.3 972 40.5
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.9e-160 570.9 958 42.4
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.2e-160 569.7 1100 38.2
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.6e-159 567.8 1026 39.7
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.1e-159 567.4 964 40.0
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 2.3e-158 563.9 880 41.9
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.3e-158 563.9 971 40.1
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.3e-156 558.1 958 40.5
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 4.8e-156 556.2 974 39.3
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 6.3e-156 555.8 950 40.3
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 4.1e-155 553.1 958 39.7
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.1e-151 540.8 1036 39.2
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.8e-150 537.7 990 37.6
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 3.0e-150 537.0 952 39.6
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.9e-150 536.6 960 37.8
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 2.0e-149 534.3 909 40.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.7e-148 531.2 993 36.8
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 8.2e-148 528.9 999 38.3
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-145 521.5 852 41.3
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 3.8e-145 520.0 960 39.3
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 9.4e-144 515.4 926 39.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.6e-143 514.6 1007 36.5
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 8.0e-143 512.3 989 38.8
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.4e-142 511.5 1001 37.4
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.8e-142 511.1 953 38.6
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.5e-141 508.1 963 38.7
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 5.7e-141 506.1 957 39.7
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.4e-139 500.7 955 37.3
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.1e-139 500.4 798 41.7
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.7e-138 497.3 753 42.8
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.2e-136 489.2 962 37.7
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 7.2e-136 489.2 960 37.3
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.4e-131 474.2 777 41.8
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 5.9e-130 469.5 966 37.7
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 6.5e-129 466.1 963 37.4
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.9e-128 464.5 973 36.9
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 5.5e-128 463.0 952 37.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 5.2e-126 456.4 966 36.0
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.2e-125 455.3 959 36.0
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.6e-125 454.1 965 36.1
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 3.4e-125 453.8 962 35.9
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.4e-125 453.4 807 40.1
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 7.5e-125 452.6 974 35.8
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.7e-124 451.4 971 35.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 3.7e-124 450.3 961 35.5
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.4e-123 447.6 962 36.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.2e-122 445.3 767 40.2
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.6e-122 444.9 531 47.1
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 8.6e-121 439.1 557 46.9
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.3e-120 437.2 1015 33.8
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 7.3e-120 436.0 1013 34.9
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 8.9e-118 429.1 576 45.5
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 7.5e-117 426.0 543 47.0
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.1e-115 422.2 551 47.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.1e-112 412.1 1016 31.9
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.3e-108 398.7 707 39.9
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.9e-104 384.8 871 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.6e-104 383.3 1057 30.3
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.2e-101 375.6 1040 31.4
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 3.1e-94 350.9 373 55.2
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.9e-91 341.7 190 92.6
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 2.1e-90 338.2 781 32.7
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 8.9e-86 322.8 552 39.7
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.9e-84 317.8 792 32.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 9.3e-83 312.8 806 31.5
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 9.3e-83 312.8 464 42.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.1e-82 311.6 632 37.2
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 5.6e-80 303.5 325 54.5
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.9e-78 296.6 687 34.2
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 9.9e-77 292.7 317 53.0
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 2.7e-74 284.6 807 30.6
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 6.0e-74 283.5 542 37.3
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.4e-70 272.3 553 36.0
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 2.6e-69 268.1 467 39.4
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 3.4e-61 241.1 609 33.3
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 9.0e-54 216.5 293 44.7
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.7e-52 212.2 272 47.1
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 9.3e-51 206.5 235 51.5
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.6e-47 195.7 258 46.1
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.8e-47 194.9 293 41.6
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 7.9e-42 176.8 248 43.5
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-41 176.4 247 42.9
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.3e-40 171.4 253 39.9
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.8e-39 167.5 185 55.1
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.6e-37 161.8 165 53.3
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 4.5e-37 161.0 380 35.0
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 5.0e-36 157.5 386 32.6
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.3e-32 144.8 361 33.0
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.2e-31 140.2 212 46.2
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 3.1e-30 138.3 267 38.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.0e-30 137.1 231 41.6
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.2e-27 128.3 175 45.7
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.2e-27 127.9 113 60.2
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 2.2e-23 115.5 221 38.5
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 8.5e-20 103.6 195 39.5
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.9e-19 102.4 185 40.5
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.5e-19 102.1 253 33.2
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-19 102.1 101 57.4
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 7.2e-19 100.5 190 36.3
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-17 96.3 523 26.0
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 5.2e-17 94.4 183 32.8
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 8.8e-17 93.6 124 41.1
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.6e-16 92.0 152 36.2
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.4e-16 91.7 160 35.0
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 7.5e-16 90.5 118 48.3
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.1e-14 84.7 67 67.2
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.0e-13 82.4 72 56.9
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 4.5e-13 81.3 90 44.4
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.7e-12 79.3 173 31.8
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 2.3e-12 79.0 79 54.4
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.9e-12 78.6 68 58.8
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 8.6e-12 77.0 67 58.2
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 4.2e-11 74.7 81 40.7
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 4.0e-09 68.2 186 30.6
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.2e-09 67.8 100 45.0
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 4.9e-07 61.2 72 48.6
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 6.3e-07 60.8 51 58.8
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.4e-06 59.7 75 49.3
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.2e-06 57.0 77 46.8


User provided reference genes

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